View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17638_high_35 (Length: 216)
Name: NF17638_high_35
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_high_35 |
 | |
|
| [»] scaffold0002 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0002 (Bit Score: 186; Significance: 1e-101; HSPs: 1)
Name: scaffold0002
Description:
Target: scaffold0002; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 439330 - 439125
Alignment:
| Q |
1 |
acacatatgcttggattttattcgtattatttgttccattttcaattaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
439330 |
acacatatgcttggattttattcgtattatttgttccattttcagttaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcat |
439231 |
T |
|
| Q |
101 |
ttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaactagtgtttgtctttatgggc |
200 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||| |
|
|
| T |
439230 |
ttccatctttgtggtgcatcctatcattgtaaaggtcattgatcgcaagacagaaagagatgaatgggatgctaaccaactagtttttgtctttatgggc |
439131 |
T |
|
| Q |
201 |
cctatg |
206 |
Q |
| |
|
| |||| |
|
|
| T |
439130 |
cttatg |
439125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 94; Significance: 5e-46; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 28607573 - 28607762
Alignment:
| Q |
1 |
acacatatgcttggattttattcgtattatttgttccattttcaattaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcat |
100 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||| ||||||||||| |||||||| | ||||||||||| ||||||| | ||||| |
|
|
| T |
28607573 |
acacatatgcttggattttattcatattatttgttccattttcagttaatggtacaagtgcaatatatccagtgttaagcactgtaatatttgttttcat |
28607672 |
T |
|
| Q |
101 |
ttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaactagtgtttgt |
190 |
Q |
| |
|
|| ||||||||||||||||||| | || | ||| |||||| |||||||||||||||||||||||||| ||| ||||||| |||| ||||| |
|
|
| T |
28607673 |
ttgcatctttgtggtgcatcctataatcgcaaaagtcattaatcgcaagacagaaagagatgaatgggatggtaaccaattagtctttgt |
28607762 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 7589922 - 7589830
Alignment:
| Q |
87 |
atatttatattcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaatgctaaccaa |
179 |
Q |
| |
|
|||||||| || |||| |||||||||||| || | ||||||| |||| |||||||||||||||| |||||||| ||||||||| ||||||| |
|
|
| T |
7589922 |
atatttattttaatttgcatctttgtggtatattgtatcattgtcaaggccattgatcgcaagacaaaaagagattaatggaatgataaccaa |
7589830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 3 - 50
Target Start/End: Complemental strand, 7590006 - 7589959
Alignment:
| Q |
3 |
acatatgcttggattttattcgtattatttgttccattttcaattaat |
50 |
Q |
| |
|
||||||||||||||||||||| | |||||| ||||||||||||||||| |
|
|
| T |
7590006 |
acatatgcttggattttattcatgttatttcttccattttcaattaat |
7589959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 1e-21; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 169
Target Start/End: Original strand, 13658948 - 13659116
Alignment:
| Q |
1 |
acacatatgcttggattttattcgtattatttgttccattttcaattaatggtacagaggcaatatacacgacgttaagcactgcaatatttatattcat |
100 |
Q |
| |
|
|||||||| |||||||||||| | | | || ||||||| |||||||||||| || |||||||||| | ||||||||| | |||||| | ||||| |
|
|
| T |
13658948 |
acacatattcttggattttatacacagttattcttccattctcaattaatggtgtaggggcaatatactcagtgttaagcaccgtcatatttgttttcat |
13659047 |
T |
|
| Q |
101 |
ttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatggaa |
169 |
Q |
| |
|
|| ||| ||| |||||| ||| ||||||||||| |||||||||||||||| ||||||||||||||||| |
|
|
| T |
13659048 |
ttgcatttttctggtgcgtccgatcattgtaaagttcattgatcgcaagactgaaagagatgaatggaa |
13659116 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 96 - 167
Target Start/End: Original strand, 13651557 - 13651628
Alignment:
| Q |
96 |
ttcatttccatctttgtggtgcatcctgtcattgtaaaggtcattgatcgcaagacagaaagagatgaatgg |
167 |
Q |
| |
|
||||||| ||| |||||||||| |||| |||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
13651557 |
ttcatttgcatttttgtggtgcgtcctatcatcgtaaaggtcattgatcgcaagcttgaaagagatgaatgg |
13651628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University