View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_10 (Length: 415)
Name: NF17638_low_10
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 190; Significance: 1e-103; HSPs: 7)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 190; E-Value: 1e-103
Query Start/End: Original strand, 219 - 408
Target Start/End: Complemental strand, 31150626 - 31150437
Alignment:
| Q |
219 |
tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt |
318 |
Q |
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| T |
31150626 |
tgatttggtgttgttaaataacagaataaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagt |
31150527 |
T |
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| Q |
319 |
tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
408 |
Q |
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| T |
31150526 |
tttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgtcc |
31150437 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 17 - 146
Target Start/End: Complemental strand, 31150833 - 31150704
Alignment:
| Q |
17 |
acgttataagtaagtaatcttccttattgatgcacttacatgtgcaaattttaaagctttgctttgacacataaatttagtaattgatcacgacgtcctc |
116 |
Q |
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| T |
31150833 |
acgttataagtaagtaatcttccttattgatgcacttacatgtgcaaattttaaagctttgctttgacacataaatttagtaattgatcacgacgtcctc |
31150734 |
T |
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| Q |
117 |
gagaaactatattaattaatcaaaagagag |
146 |
Q |
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| T |
31150733 |
gagaaactatattaattaatcaaaagagag |
31150704 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 271 - 406
Target Start/End: Complemental strand, 31161868 - 31161733
Alignment:
| Q |
271 |
agattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatt |
370 |
Q |
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| T |
31161868 |
agattgaaaagatcgtcgaagaaattatgaatatactgggttacaagtctacaagtcttccaaattatttagctgggatggattctcttacagaagaatt |
31161769 |
T |
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| Q |
371 |
agaaaaacatttacttttggactcgcttgatgatgt |
406 |
Q |
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| T |
31161768 |
agaaaaacatttacttttggattcggttgatgatgt |
31161733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 272 - 377
Target Start/End: Complemental strand, 31034207 - 31034102
Alignment:
| Q |
272 |
gattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctcctctacatgaatta |
371 |
Q |
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|||||||||||| ||||||||||| |||||| ||||||||| |||||| | |||||||||| ||||||| ||||| |||||| | || | |||||| |
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| T |
31034207 |
gattgaaaagattgttgaagagataataaatagattgggttaccggttttcaagtcttccaaaagatttagttgggattgattctcttatagaagaatta |
31034108 |
T |
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| Q |
372 |
gaaaaa |
377 |
Q |
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|||||| |
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| T |
31034107 |
gaaaaa |
31034102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 31159501 - 31159451
Alignment:
| Q |
245 |
taaaacttgcaggccacaacatgcagagattgaaaagatcgttgaagagat |
295 |
Q |
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| T |
31159501 |
taaaactttcaggcctcaatatgcagagattgaaaagattgttgaagagat |
31159451 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 337 - 406
Target Start/End: Original strand, 31476882 - 31476951
Alignment:
| Q |
337 |
atttagtcgggatgcattctcctctacatgaattagaaaaacatttacttttggactcgcttgatgatgt |
406 |
Q |
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| T |
31476882 |
atttagttgggatggattctcctagacaagaattagaaaagcttttacttttggactctgttgatgatgt |
31476951 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 267 - 357
Target Start/End: Complemental strand, 31528639 - 31528549
Alignment:
| Q |
267 |
gcagagattgaaaagatcgttgaagagattgtaaatatgttgggttacaagttttctaatcttccaaaaaatttagtcgggatgcattctc |
357 |
Q |
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| T |
31528639 |
gcagagattaaaaagattgttgaagagatagtaaatatattgaattgcaaattttcaagccttccaaatgatttagttgggacgcattctc |
31528549 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 40 - 77
Target Start/End: Complemental strand, 12781920 - 12781883
Alignment:
| Q |
40 |
ttattgatgcacttacatgtgcaaattttaaagctttg |
77 |
Q |
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| T |
12781920 |
ttattgatgcaattacttgtgcaaattttaaagctttg |
12781883 |
T |
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