View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_13 (Length: 374)
Name: NF17638_low_13
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_13 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 109 - 368
Target Start/End: Complemental strand, 40787901 - 40787643
Alignment:
| Q |
109 |
acatcttgggattgattgatcatcttgaatatgcttacattctccaatttatcttttctttgaaaatatattttatctagttcaactaattaaactcctt |
208 |
Q |
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| T |
40787901 |
acatgttgggattgattgatcatcttgaatatgcttacattctccaatttatcttttctttgaaaatatattttagctagttcaactaattaaactcctt |
40787802 |
T |
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| Q |
209 |
tggcttacataccttaaccttaaatgtcaatgtttttacatgaaagtctttgactagatttagatgcatgaccaatatcaatagaatcatctaaaatata |
308 |
Q |
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| T |
40787801 |
tggcttacataccttaaccttaaatgtcaatgtttttacatgaaagtc-ttgactagatttagatgcatgaccaatatcaatagaatcatctaaaatata |
40787703 |
T |
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| Q |
309 |
taaaacacatattcttgaacctttagcaattattaatgcaccatatgaaattcttctcac |
368 |
Q |
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| T |
40787702 |
taaaacacatattcttgaacctttagcaattattgatgcaccatgtgaaattcttatcac |
40787643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 50
Target Start/End: Complemental strand, 40787994 - 40787960
Alignment:
| Q |
16 |
caaagatcaccatgattttagaaatttaagatagc |
50 |
Q |
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| T |
40787994 |
caaagatcaccatgattttagaaatttaagatagc |
40787960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 272 - 360
Target Start/End: Original strand, 26309034 - 26309122
Alignment:
| Q |
272 |
atgcatgaccaatatcaatagaatcatctaaaatatataaaacacatattcttgaacctttagcaattattaatgcaccatatgaaatt |
360 |
Q |
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| T |
26309034 |
atgcatgaccaataacaataaaatcatctaaaatgtataagccatacatttttagacctttagtaattcttaatgcaccatgtgaaatt |
26309122 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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