View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_15 (Length: 355)
Name: NF17638_low_15
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_15 |
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Alignment Details
Target: chr2 (Bit Score: 246; Significance: 1e-136; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 246; E-Value: 1e-136
Query Start/End: Original strand, 1 - 333
Target Start/End: Original strand, 40123240 - 40123573
Alignment:
| Q |
1 |
caaaaacaagtatataaatccctcnnnnnnn-taaggtatataaaccaaagattatttttgtcaagatatataaaccaaagttaaatactccataccacn |
99 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
40123240 |
caaaaacaagtatataaatccctcaaaaaaaataaggtatataaaccaaagattatttttgttaagatatataaaccaaagttaaatactccataccact |
40123339 |
T |
|
| Q |
100 |
nnnnnnnnnnnngtcaaatggatagatttcattacaggtttaaaaacctatgaaaattgctctttatgcacctaacaattgcttacaaacaccttaaact |
199 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
40123340 |
tttttgttttttgtcaaatggataaatttcattacaggtttaaaaacctatgaaaattgctctttatgcacctaacaattgcttacaaaccccttaaact |
40123439 |
T |
|
| Q |
200 |
ttcgaaaatatcttcaaggtggttaactaccgttctcctatgaatggtagttaattattgttggatactcagccatatttaggaatggtggttgttcaaa |
299 |
Q |
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||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
40123440 |
ttcgaaaatatcttcaacgtggttaactaccgttctcctatgaatggtagttaattattgttggatactcagccatatttaggaacggtggttgttcaaa |
40123539 |
T |
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| Q |
300 |
tcactattgaattacctggttctatgtctcatct |
333 |
Q |
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|||||||||||||||||||||||||||||||||| |
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| T |
40123540 |
tcactattgaattacctggttctatgtctcatct |
40123573 |
T |
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