View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17638_low_16 (Length: 348)
Name: NF17638_low_16
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_16 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 116; Significance: 6e-59; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 6 - 125
Target Start/End: Original strand, 51943999 - 51944118
Alignment:
| Q |
6 |
catgcatatgattttcttttgacaaaaaatacatgcatatgatataatagagaaaattttgtcacaacttaaatcagactacaatgttaggttgaattat |
105 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
51943999 |
catgcatatgattttcttttgacaaaaaatacatgcatatgatataatagagaaaattttgtcacaacttaaatcagactacaatgttaggttgaattac |
51944098 |
T |
|
| Q |
106 |
ttcagaaccccttttacatg |
125 |
Q |
| |
|
|||||||||||||||||||| |
|
|
| T |
51944099 |
ttcagaaccccttttacatg |
51944118 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 268 - 344
Target Start/End: Original strand, 51944254 - 51944329
Alignment:
| Q |
268 |
aaatatcatgtgacatttgtcaatcacaataatataaatgtataaaaagacaaaaaattatagttttcttctctctc |
344 |
Q |
| |
|
|||||| |||||| ||||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
51944254 |
aaatattatgtgatatttgtcaatcacaatattacaaatgtataaaa-gacaaaaaattatagttttcttctctctc |
51944329 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 306 - 344
Target Start/End: Original strand, 5036379 - 5036417
Alignment:
| Q |
306 |
tgtataaaaagacaaaaaattatagttttcttctctctc |
344 |
Q |
| |
|
|||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
5036379 |
tgtataaaaagacaaaaaatcatagttttcttctctctc |
5036417 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 278 - 342
Target Start/End: Original strand, 42866503 - 42866566
Alignment:
| Q |
278 |
tgacatttgtcaatcacaataatataaatgtataaaaagacaaaaaattatagttttcttctctc |
342 |
Q |
| |
|
||||||| |||||| |||||| | ||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
42866503 |
tgacattggtcaattacaatatcacaaatgtacaaaaagacaaaaaa-tatggttttcttctctc |
42866566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University