View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_17 (Length: 344)
Name: NF17638_low_17
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_17 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 18738328 - 18738001
Alignment:
| Q |
1 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtgacattaagaacagtt |
100 |
Q |
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| T |
18738328 |
atagtgaattgtgcttccaatagtgttggagtgttctgcaagaaactcgacacccaagttagctgtgaaagtttttccattggtgacattaagaacagtt |
18738229 |
T |
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| Q |
101 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacaagcgagaatcaagatcatccattcaccaagaattgcga |
200 |
Q |
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| T |
18738228 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcaatcgaacatgcgagaatcaagatcatccattcaccgagaattgcaa |
18738129 |
T |
|
| Q |
201 |
agagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtgaagagatgattctttgttgtttttcatggttgaaagatt |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18738128 |
agagtgcagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtgaagagatgattctttgttgtttttcatggttgaaagatt |
18738029 |
T |
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| Q |
301 |
tttggtgagaatgtgagaaagagaagat |
328 |
Q |
| |
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||| ||||||||||| ||||||||||| |
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| T |
18738028 |
ttttgtgagaatgtgcaaaagagaagat |
18738001 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-157
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 18684930 - 18684603
Alignment:
| Q |
1 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtgacattaagaacagtt |
100 |
Q |
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| T |
18684930 |
atagtgaattgtgcttccaatagtgttggagtattccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtaacattaagaacagtt |
18684831 |
T |
|
| Q |
101 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacaagcgagaatcaagatcatccattcaccaagaattgcga |
200 |
Q |
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| T |
18684830 |
gaagttgttgaatggagtgtgaaagaaggagttagggggatgaagaacaaggcgatcgaacatgtgagaatcaagatcatccattcaccaagaattgcga |
18684731 |
T |
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| Q |
201 |
agagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtgaagagatgattctttgttgtttttcatggttgaaagatt |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||||||||||||| |
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| T |
18684730 |
agagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtaaagagattgttctttattgtttttcatggttgaaagatt |
18684631 |
T |
|
| Q |
301 |
tttggtgagaatgtgagaaagagaagat |
328 |
Q |
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||||||||||||||||||||| |||||| |
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| T |
18684630 |
tttggtgagaatgtgagaaagtgaagat |
18684603 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 18649198 - 18648871
Alignment:
| Q |
1 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtgacattaagaacagtt |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
18649198 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacctaagttggctttgaaggtttttccattggtgacattaagaacagtt |
18649099 |
T |
|
| Q |
101 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacaagcgagaatcaagatcatccattcaccaagaattgcga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||| | ||||||||||||||||||||||||||||||||| | |
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| T |
18649098 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaacgaagaacaatgcgattgaacatgtgagaatcaagatcatccattcaccaagaattgcaa |
18648999 |
T |
|
| Q |
201 |
agagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtgaagagatgattctttgttgtttttcatggttgaaagatt |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||| |||||||||| |
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| T |
18648998 |
agagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtaaagagattgttctttgttgttcttcatgattgaaagatt |
18648899 |
T |
|
| Q |
301 |
tttggtgagaatgtgagaaagagaagat |
328 |
Q |
| |
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||| |||||||||||||||||||||||| |
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| T |
18648898 |
ttttgtgagaatgtgagaaagagaagat |
18648871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 273; E-Value: 1e-152
Query Start/End: Original strand, 1 - 328
Target Start/End: Complemental strand, 18717663 - 18717335
Alignment:
| Q |
1 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtgacattaagaacagtt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
18717663 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacctaagttggctgtgaaggtttttccatcggtgacattaagaacagtt |
18717564 |
T |
|
| Q |
101 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacaagcgagaatcaagatcatccattcacc-aagaattgcg |
199 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||| |
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| T |
18717563 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcgagaatcaagatcatccattcaccaaagaattgca |
18717464 |
T |
|
| Q |
200 |
aagagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtgaagagatgattctttgttgtttttcatggttgaaagat |
299 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||||||||||| |
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| T |
18717463 |
aagagtgcagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtaaagagattgttctgtgttgtttttcatggttgaaagat |
18717364 |
T |
|
| Q |
300 |
ttttggtgagaatgtgagaaagagaagat |
328 |
Q |
| |
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|||| ||||||||||| ||||||||||| |
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| T |
18717363 |
tttttgtgagaatgtgcaaaagagaagat |
18717335 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 1 - 313
Target Start/End: Complemental strand, 18671656 - 18671344
Alignment:
| Q |
1 |
atagtgaattgtgcttccaatagtgttggagtgttccgcaagaaactcgacacccaagttggctgtgaaggtttttccattggtgacattaagaacagtt |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18671656 |
atagtgaactgtgcttccaatagtgttggagtgttctgcaagaaactcaacacccaagttggctgtgaaggtttttccattggtgacattaagaacagtt |
18671557 |
T |
|
| Q |
101 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacaagcgagaatcaagatcatccattcaccaagaattgcga |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| | |
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| T |
18671556 |
gaagttgttgaatggagtgtgaaagaaggagttagaggaatgaagaacaatgcgatcgaacatgcaagaatcaagatcatccattcaccaagaattgcaa |
18671457 |
T |
|
| Q |
201 |
agagtgtagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtgaagagatgattctttgttgtttttcatggttgaaagatt |
300 |
Q |
| |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||| |
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| T |
18671456 |
agagtgcagttgctgttgcataagcttgattcaaagatgaatcatcaagatcaatggtgtaaagagatttttctttgttgtttttcatggttgaaagatt |
18671357 |
T |
|
| Q |
301 |
tttggtgagaatg |
313 |
Q |
| |
|
||| ||||||||| |
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|
| T |
18671356 |
ttttgtgagaatg |
18671344 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 31
Target Start/End: Complemental strand, 18665892 - 18665862
Alignment:
| Q |
1 |
atagtgaattgtgcttccaatagtgttggag |
31 |
Q |
| |
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||||||||||||||||||||||||||||||| |
|
|
| T |
18665892 |
atagtgaattgtgcttccaatagtgttggag |
18665862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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