View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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	Query
	Query hiting target	Query hiting target's complemental strand
	Query's complemental strand hiting target	Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17638_low_19 (Length: 329)

Name: NF17638_low_19

Description: NF17638

Algorithm: BLASTN 2.2.26 [Sep-21-2011]

Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)

[»] NF17638_low_19

[»] chr3 (2 HSPs)

Target: chr3 (Bit Score: 92; Significance: 1e-44; HSPs: 2)

Name: chr3

Description:

Target: chr3; HSP #1

Raw Score: 92; E-Value: 1e-44

Query Start/End: Original strand, 176 - 319

Target Start/End: Original strand, 34895682 - 34895819

Alignment:

Q	176	gagagagactcagaatgaaaaggacagggcatagtattattttgggtttatttgcatttgaatgtttgtatagtgaagatcaagatgttacttgtttgtt	275	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|
T	34895682	gagagagactcagaatgaaaaggacagggcatagtattattttgggtttatttgcatttgaatgtttgtatagtg------gagatgttgcttgtttgtt	34895775	T

Q	276	ttggttgcaattatgnnnnnnnacatgagttgcatttgcatatt	319	Q
		\|\|\|\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34895776	ttggttgcaattatgtttttttacatgagttgcatttgcatatt	34895819	T

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Target: chr3; HSP #2

Raw Score: 75; E-Value: 2e-34

Query Start/End: Original strand, 35 - 113

Target Start/End: Original strand, 34895541 - 34895619

Alignment:

Q	35	attatatatatgatgtctaatatttgattgacacatatcatatgtacattttaaattattccaaaactactaacatgaa	113	Q
		\|\|\|\|\|\|\|\|\|\|\|\| \|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|\|
T	34895541	attatatatatgctgtctaatatttgattgacacatatcatatgtacattttaaattattccaaaactactaacatgaa	34895619	T

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