View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_20 (Length: 322)
Name: NF17638_low_20
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_20 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 303
Target Start/End: Complemental strand, 37629898 - 37629590
Alignment:
| Q |
1 |
tcaatgttggtgctgggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttc |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629898 |
tcaatgttggtgctgggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttc |
37629799 |
T |
|
| Q |
101 |
cacacttttgtacttaccatttgttattacctgtcacatt-----nnnnnnnnnnnnnnttaatgcttgatatgaatcatttgttgttgattttatatgt |
195 |
Q |
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||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
37629798 |
cacacttttgtacttgccatttgttattacctgtcacattaaaaataaaaaataaaaaattaatgcttgatatgaatcatttgttgttgattt--tatgt |
37629701 |
T |
|
| Q |
196 |
ttgtaaaaatgttaatataaatttagaagaatg---nnnnnnnnacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatc |
292 |
Q |
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|||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37629700 |
ttgtaaaaatgtcaatataaatttagaagaatgtttttttttttacctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatc |
37629601 |
T |
|
| Q |
293 |
tacccagttac |
303 |
Q |
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||||||||||| |
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| T |
37629600 |
tacccagttac |
37629590 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 36871184 - 36871303
Alignment:
| Q |
15 |
gggtagataacagcatcactaccagggttgtagaatgaggctatagacattcttgttccatcagtttgtgctaccacacggtgttccacacttttgtact |
114 |
Q |
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| T |
36871184 |
gggtaaatgacagcatcactcccagggttgtagaatgatgctatggacattcttgttccatttgtttgtgctatcacacggtgttccacactcttgtact |
36871283 |
T |
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| Q |
115 |
taccatttgttattacctgt |
134 |
Q |
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| |||||||||||||||||| |
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| T |
36871284 |
tgccatttgttattacctgt |
36871303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 8927112 - 8927057
Alignment:
| Q |
237 |
acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatc |
292 |
Q |
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|||||||||||||||||||||||||||||||| || ||| |||| ||||||||||| |
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| T |
8927112 |
acctcaagttggtcaccaaggttgatgacaatagagtgaggcattggagggacatc |
8927057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 237 - 292
Target Start/End: Complemental strand, 55528201 - 55528146
Alignment:
| Q |
237 |
acctcaagttggtcaccaaggttgatgacaatggaatgatgcatgggagggacatc |
292 |
Q |
| |
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||||||| |||||||||||||||||| ||||||||||| |||| || |||||||| |
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| T |
55528201 |
acctcaatttggtcaccaaggttgataacaatggaatggcgcattggtgggacatc |
55528146 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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