View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_21 (Length: 317)
Name: NF17638_low_21
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_21 |
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Alignment Details
Target: chr3 (Bit Score: 227; Significance: 1e-125; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 18 - 298
Target Start/End: Complemental strand, 42099671 - 42099375
Alignment:
| Q |
18 |
gtgaagtcaaatctcttcatcattaaagggatccaccagtgaatatcacacactc---caca-------------ataaataacaaatatctttgaaaaa |
101 |
Q |
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| T |
42099671 |
gtgaagtcaaatctcttcatcattaaagggatccaccagtgaatatcacacacacatacacaccaataaaactccacaaataacaaatatctttgaaaaa |
42099572 |
T |
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| Q |
102 |
attaaggattgataactgacctgtgatctacctcatagagaagatcaagaatttgtttagaaggaagctgtaattgaggggaatgaagcctggtccgaag |
201 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42099571 |
attaaggattgataactgacctgtgatctacctcatagagaagatcaagaatttgtttagaaggaagctgtaattgaggggaatgaagcctggtccgaag |
42099472 |
T |
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| Q |
202 |
aggaaacaataacaaattcaatgatattaataattcaactgtttgtgtgaaaatggattagtttccatgtattgcttgaagtaaaatttaaggtata |
298 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
42099471 |
aggaaacaataacaaattcaatgatattaataattcaactgtttgtgtgaaaatggattagtttccatggattgcttgaagtaaaatttaaggtata |
42099375 |
T |
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