View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_23 (Length: 301)
Name: NF17638_low_23
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 256; Significance: 1e-142; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 36406157 - 36406428
Alignment:
| Q |
13 |
cagagacatttggagtttgacgtaaatctttggagttactcaaatcaattactttcagctttccataatactgaacggaaaaaaccaagaaacaaattag |
112 |
Q |
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| T |
36406157 |
cagagacatttggagtttgacgtaaatctttggagttactcaaatcaattactttcagctttccataatactgaacggaaaaaaccaagaaacaaattag |
36406256 |
T |
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| Q |
113 |
catttgaaaaccaagaaaaatactataagctacaccacggttcttaacagaaaattcttacctcatttccattccataactgtttaactttactgttgat |
212 |
Q |
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| T |
36406257 |
catttgaaaaccaagaaaaatactataagctacaccacggttcttaacagaaaattcttacctcatttccattccacaactgtttaattttactattgat |
36406356 |
T |
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| Q |
213 |
catttgtaaatgtacaagctcatctagttgaaccccaactggtagagaattcagtggatatccccaccatac |
284 |
Q |
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| T |
36406357 |
catttgtaaatgtacaagctcatctagttgaatcccaactggtagagaattcagtggatatccccaccatac |
36406428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 13 - 284
Target Start/End: Original strand, 36398148 - 36398423
Alignment:
| Q |
13 |
cagagacatttggagtttgacgtaaatctttggagttactcaaatcaattactttcagctttccataatactga-acg--gaaaaaaccaagaaacaaat |
109 |
Q |
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| T |
36398148 |
cagagacatttggagtttgacgtaaatctttagagttactcaaatcaattactttcagctttccataatactgagaagaagaaaaaaacaagaaacagat |
36398247 |
T |
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| Q |
110 |
tagcatttgaaaaccaagaaa-aatactataagctacaccacggttcttaacagaaaattcttacctcatttccattccataactgtttaactttactgt |
208 |
Q |
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| T |
36398248 |
tagcatttgaaaatcctgtgtcaatactataaattatatgaaggatcttaacggaaaattctcaccttatttccattccacaactgtttaactttactgt |
36398347 |
T |
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| Q |
209 |
tgatcatttgtaaatgtacaagctcatctagttgaaccccaactggtagagaattcagtggatatccccaccatac |
284 |
Q |
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| T |
36398348 |
tgatcatttgtaaatttacaagctcatctagttgaaccccaactggtagagaattcagtggatatccccaccatac |
36398423 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 16 - 88
Target Start/End: Original strand, 36374492 - 36374564
Alignment:
| Q |
16 |
agacatttggagtttgacgtaaatctttggagttactcaaatcaattactttcagctttccataatactgaac |
88 |
Q |
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| T |
36374492 |
agacatttggagtttgacgtagattttttgaattactcgaatcaattactttcagctttctaaaatactgaac |
36374564 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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