View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_24 (Length: 279)
Name: NF17638_low_24
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_24 |
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Alignment Details
Target: chr5 (Bit Score: 228; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 33 - 272
Target Start/End: Complemental strand, 15560578 - 15560339
Alignment:
| Q |
33 |
aacttatttgctatttgttactccctctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaaataaggataaggatt |
132 |
Q |
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| T |
15560578 |
aacttatttgctatttgttactccctctgttttaaaatggaaggtacaattggaatttaaccttaaactgacctaattaattgaaataaggataaggatt |
15560479 |
T |
|
| Q |
133 |
aaggatactttgacaaaaatgggagattgagattttaacacttcatcgctactcatcttcttcataacaccgtaaaccagttggtggctatcctgaatca |
232 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
15560478 |
aaggatactttgacaaaaatgggagattgagattttaacacttcatcgctactcatcttcttcataacaccgtaaaccagttggtggctatcctgattca |
15560379 |
T |
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| Q |
233 |
gaaggatataaatggttagtttatgtgttaatattcttgg |
272 |
Q |
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||||||||||||||||||||||||||||||||||| |||| |
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| T |
15560378 |
gaaggatataaatggttagtttatgtgttaatatttttgg |
15560339 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 133; Significance: 3e-69; HSPs: 6)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 196
Target Start/End: Original strand, 22700848 - 22701018
Alignment:
| Q |
18 |
aattgtacgtttgacaacttatttgctatttgttactccctctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaa |
117 |
Q |
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| T |
22700848 |
aattgtacgtttgacaacttatttgctatttgttactcc-tctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaa |
22700946 |
T |
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| Q |
118 |
ataaggataaggattaaggatactttgacaaaaatgggagattgagattttaacacttcatcgctactcatcttcttca |
196 |
Q |
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| T |
22700947 |
ataagga-------taaggatactttgacaaaaatgggagattgagattttcacacttgatagctactcatcttcttca |
22701018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 22979683 - 22979513
Alignment:
| Q |
18 |
aattgtacgtttgacaacttatttgctatttgttactccctctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22979683 |
aattgtacgtttgacaacttatttgctatttgttactcc-tctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaa |
22979585 |
T |
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| Q |
118 |
ataaggataaggattaaggatactttgacaaaaatgggagattgagattttaacacttcatcgctactcatcttcttca |
196 |
Q |
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| T |
22979584 |
ataaggataa-------ggatactttgacaaaaatgggagattgagattttcacacttgatagctactcatcttcttca |
22979513 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 18 - 196
Target Start/End: Complemental strand, 22993269 - 22993099
Alignment:
| Q |
18 |
aattgtacgtttgacaacttatttgctatttgttactccctctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaa |
117 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22993269 |
aattgtacgtttgacaacttatttgctatttgttactcc-tctgttttaaaatggaaggtacaattggaatttaaccttaaactaacctaattaattgaa |
22993171 |
T |
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| Q |
118 |
ataaggataaggattaaggatactttgacaaaaatgggagattgagattttaacacttcatcgctactcatcttcttca |
196 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||| |
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| T |
22993170 |
ataaggataa-------ggatactttgacaaaaatgggagattgagattttcacacttgatagctactcatcttcttca |
22993099 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Original strand, 22701016 - 22701058
Alignment:
| Q |
230 |
tcagaaggatataaatggttagtttatgtgttaatattcttgg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22701016 |
tcagaaggatataaatggttagtttatgtgttaatatttttgg |
22701058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 22979515 - 22979473
Alignment:
| Q |
230 |
tcagaaggatataaatggttagtttatgtgttaatattcttgg |
272 |
Q |
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|
|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22979515 |
tcagaaggatataaatggttagtttatgtgttaatatttttgg |
22979473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 22993101 - 22993059
Alignment:
| Q |
230 |
tcagaaggatataaatggttagtttatgtgttaatattcttgg |
272 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||| |
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| T |
22993101 |
tcagaaggatataaatggttagtttatgtgttaatatttttgg |
22993059 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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