View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_25 (Length: 256)
Name: NF17638_low_25
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_25 |
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Alignment Details
Target: chr7 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 33761920 - 33762147
Alignment:
| Q |
15 |
acaaataacttcgattgtttcctttggctcgtctattagatcatagcctctaacagtttcgtttgcgtcattttatttctctgatttcgtgctatttgtt |
114 |
Q |
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|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33761920 |
acaaataacttcgattgtttccttcggctcgtctattagatcatagcctctaacagtttcgtttgcgtcattttatttctctgatttcgtgctatttgtt |
33762019 |
T |
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| Q |
115 |
gagctatgagaagagatgcatgacaacccctacacattgatggaaatgtatgttatcgatacaaataaacttttgaataaaaactatcgaaaattaaatc |
214 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33762020 |
gagctatgagaagagatgcatcacaacccctacacattgatggaaatgtatgttatcgatacaaataaacttttgaataaaaactatcgaaaattaaatc |
33762119 |
T |
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| Q |
215 |
aaaacaattttttaatagatcctaatct |
242 |
Q |
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|||||||||||||||||||||| ||||| |
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| T |
33762120 |
aaaacaattttttaatagatcccaatct |
33762147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 146; E-Value: 5e-77
Query Start/End: Original strand, 15 - 242
Target Start/End: Original strand, 33755944 - 33756173
Alignment:
| Q |
15 |
acaaataacttcgattgtttcctttggctcgtctattagatcatagcctctaacagtttcgtttgcgtcattttatttctctgatttcgtgctatttgtt |
114 |
Q |
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|||||||||||| ||||||||||| ||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||| || || |||||| || |
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| T |
33755944 |
acaaataacttctattgtttccttccgctcgtccattggatcatagcctctaacagtttcgtttgcgtcattttctttctctgaattagtcctatttttt |
33756043 |
T |
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| Q |
115 |
gag-ctatgagaagagatgcatgacaacccctacacattgatggaaatgtatgttatcgatacaaataaacttttgaataaaaactatcg-aaaattaaa |
212 |
Q |
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||| ||||| | | |||||||| ||| || |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
33756044 |
gagtctatgtggatagatgcatcacagcctctacacattgatggaaatgtatgtcatcgatacaaataaacttttgaataaaaactatcgaaaaattaaa |
33756143 |
T |
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| Q |
213 |
tcaaaacaattttttaatagatcctaatct |
242 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
33756144 |
tcaaaacaattttttaatagatcctaatct |
33756173 |
T |
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