View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_27 (Length: 250)
Name: NF17638_low_27
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_27 |
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Alignment Details
Target: chr6 (Bit Score: 226; Significance: 1e-125; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 226; E-Value: 1e-125
Query Start/End: Original strand, 1 - 234
Target Start/End: Original strand, 11556441 - 11556674
Alignment:
| Q |
1 |
agagcatgacacaacactagattacctttagttggaatacgactaagaagtttccatgcaaaagctaacacttttcatggacaaaccttccaacaccttg |
100 |
Q |
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| T |
11556441 |
agagcatgacacaacactagattacctttagttggaatacgactaagaagtttccatgcaaaagctaacacttttcatggacaaaccttccaacaccttg |
11556540 |
T |
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| Q |
101 |
tatgacgatttaatcgagatatcaccaccacatttcgaatgccaaccccacacattatcactctcctcccaccgcgagcaacatcaagcagggccccttg |
200 |
Q |
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| T |
11556541 |
tatgacgatttaatcgagatatcaccaccacatttcgaatgccaaccccacacattatcattctccccccaccgcgagcaacatcaagcagggccccttg |
11556640 |
T |
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| Q |
201 |
gtttctttaatgaaggaaactaacatataacata |
234 |
Q |
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| T |
11556641 |
gtttctttaatgaaggaaactaacatataacata |
11556674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 23 - 234
Target Start/End: Original strand, 11530963 - 11531181
Alignment:
| Q |
23 |
tacctttagttggaatacgactaagaagtttccatgcaaaagctaacacttttcatggacaaaccttccaacaccttgtatgacgatttaatcgagatat |
122 |
Q |
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| T |
11530963 |
tacctttagttggaatacgactaagaagtttccatgcaaaagctaacacttttcatggacaaaccttccaacaccttatatgacgatttaatcgagatat |
11531062 |
T |
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| Q |
123 |
caccaccacatttcgaatgccaaccccacaca-------ttatcactctcctcccaccgcgagcaacatcaagcagggccccttggtttctttaatgaag |
215 |
Q |
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| T |
11531063 |
caccaccacatttcgaatgccaaccccacacatcatcagtcatcactctccccccaccgcgagcaacatcaagcaggcccccttggattctttaatgaag |
11531162 |
T |
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| Q |
216 |
gaaactaacatataacata |
234 |
Q |
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| T |
11531163 |
gaaactaacatataacata |
11531181 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 11556054 - 11556092
Alignment:
| Q |
81 |
acaaaccttccaacaccttgtatgacgatttaatcgaga |
119 |
Q |
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| T |
11556054 |
acaaactttccaacaccttgtatgacgatttaatcgaga |
11556092 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 119
Target Start/End: Original strand, 11530557 - 11530595
Alignment:
| Q |
81 |
acaaaccttccaacaccttgtatgacgatttaatcgaga |
119 |
Q |
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| T |
11530557 |
acaaactttccaacaccttgtatgaggatttaatcgaga |
11530595 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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