View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_29 (Length: 248)
Name: NF17638_low_29
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_29 |
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| [»] scaffold0653 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9299787 - 9300023
Alignment:
| Q |
1 |
acatcatcaaattaatcaaatcgacgaattaccaagtcaaaacaacataatactacnnnnnnnngttgtgtggattcatcaggttcacttgtggtgtctt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
9299787 |
acatcatcaaattcatcaaatcgacgaattaccaagtcaaaacgacataatactacaaaaaaaagttgtgtggactcatcaggttcacttgtggtgtctt |
9299886 |
T |
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| Q |
101 |
gttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataagaattcagacaattacttcagatggaaagcaaaacgaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
9299887 |
gtcatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccatcagaattcagacaattacttctgatggaaaccaaaacgaa |
9299986 |
T |
|
| Q |
201 |
aataatattcaaggaggtaatagtggaaatgatgatg |
237 |
Q |
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| T |
9299987 |
aataatattcaaggaggtaatagtggaaatgatgatg |
9300023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 237
Target Start/End: Original strand, 9304336 - 9304572
Alignment:
| Q |
1 |
acatcatcaaattaatcaaatcgacgaattaccaagtcaaaacaacataatactacnnnnnnnngttgtgtggattcatcaggttcacttgtggtgtctt |
100 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
9304336 |
acatcatcaaattcatcaaatcgacgaattaccaagtcaaaacgacataatactacaaaaaaaagttgtgtggactcatcaggttcacttgtggtgtctt |
9304435 |
T |
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| Q |
101 |
gttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataagaattcagacaattacttcagatggaaagcaaaacgaa |
200 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
9304436 |
gtcatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccatcagaattcagacaattacttctgatggaaaccaaaacgaa |
9304535 |
T |
|
| Q |
201 |
aataatattcaaggaggtaatagtggaaatgatgatg |
237 |
Q |
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| T |
9304536 |
aataatattcaaggaggtaatagtggaaatgatgatg |
9304572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 9296355 - 9296525
Alignment:
| Q |
65 |
gttgtgtggattcatcaggttcacttgtggtgtcttgttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataaga |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| || |
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| T |
9296355 |
gttgtgtggattcatcaggttcacttgtggtgtcttgtcctgttgattcatcaataatgagtgaggtagatccttcatacattcaattactaccatcagg |
9296454 |
T |
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| Q |
165 |
attcagacaattacttcagatggaaagcaaaacgaaaataatattcaaggaggtaatagtggaaatgatgatg |
237 |
Q |
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| T |
9296455 |
tttc--ataattacttctgatggaaagcaaaatgataataatattcaaggaggtaatagtggtaatgatgatg |
9296525 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 65 - 237
Target Start/End: Original strand, 9286563 - 9286733
Alignment:
| Q |
65 |
gttgtgtggattcatcaggttcacttgtggtgtcttgttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataaga |
164 |
Q |
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|||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||| || ||||||| || |
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| T |
9286563 |
gttgtgtggactcatcaggttcacttgtggtgtcttgtcctattgattcatcaataatgagtgaggcagatccttcatacattcaattactaccatcagg |
9286662 |
T |
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| Q |
165 |
attcagacaattacttcagatggaaagcaaaacgaaaataatattcaaggaggtaatagtggaaatgatgatg |
237 |
Q |
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| T |
9286663 |
tttc--ataattacttctgatggaaagcaaaatgaaaataatattcaaggaggtaatagtggtaatgatgatg |
9286733 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 9247075 - 9247109
Alignment:
| Q |
1 |
acatcatcaaattaatcaaatcgacgaattaccaa |
35 |
Q |
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| T |
9247075 |
acatcatcaaattaatcaaatcgacgaagtaccaa |
9247109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 114; Significance: 6e-58; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 65 - 237
Target Start/End: Complemental strand, 1754 - 1584
Alignment:
| Q |
65 |
gttgtgtggattcatcaggttcacttgtggtgtcttgttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataaga |
164 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| || |
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| T |
1754 |
gttgtgtggattcatcaggttcacttgtggtgtcttgtcctgttgattcatcaataatgagtgaggtagatccttcatacattcaattactaccatcagg |
1655 |
T |
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| Q |
165 |
attcagacaattacttcagatggaaagcaaaacgaaaataatattcaaggaggtaatagtggaaatgatgatg |
237 |
Q |
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||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| |||||||||| |
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| T |
1654 |
tttc--ataattacttctgatggaaagcaaaatgaaaataatattcaaggaggtaatagtggtaatgatgatg |
1584 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 6813 - 6779
Alignment:
| Q |
1 |
acatcatcaaattaatcaaatcgacgaattaccaa |
35 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
6813 |
acatcatcaaattaatcaaatcgacgaagtaccaa |
6779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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