View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_31 (Length: 240)
Name: NF17638_low_31
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 201; Significance: 1e-110; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 8259668 - 8259896
Alignment:
| Q |
13 |
aatatgaaacat-gagagtttgtcaaactcgataatatatactcaataccctgaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
111 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8259668 |
aatatgaaacattgagagtttgtcaaactcgataatatatactcaataccctcaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
8259767 |
T |
|
| Q |
112 |
gtatcaaagaggagaaacaaaagttagtaaccattataaagaggaacagttgtgagagaaaaatcattgtagagacgagtaaccaaagaagaagctacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8259768 |
gtatcaaagaggagaaacaaaagttagtaaccattatagagaggaacaattgtgagagaaaaatcattgtagagacgagtaaccaaataagaagctacac |
8259867 |
T |
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| Q |
212 |
cccgggagatgaaccatcatagagaagaa |
240 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
8259868 |
cccgagagatgaaccatcatagagaagaa |
8259896 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 13 - 240
Target Start/End: Original strand, 8273086 - 8273314
Alignment:
| Q |
13 |
aatatgaaacat-gagagtttgtcaaactcgataatatatactcaataccctgaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
111 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8273086 |
aatatgaaacattgagagtttgtcaaactcgataatatatactcaataccctcaagctaaattaactcttgaaaataaatcaaacaaacttatatcataa |
8273185 |
T |
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| Q |
112 |
gtatcaaagaggagaaacaaaagttagtaaccattataaagaggaacagttgtgagagaaaaatcattgtagagacgagtaaccaaagaagaagctacac |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
8273186 |
gtatcaaagaggagaaacaaaagttagtaaccattatagagaggaacaattgtgagagaaaaatcattgtagagacgagtaaccaaataagaagctacac |
8273285 |
T |
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| Q |
212 |
cccgggagatgaaccatcatagagaagaa |
240 |
Q |
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|||| |||||||||||||||||||||||| |
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| T |
8273286 |
cccgagagatgaaccatcatagagaagaa |
8273314 |
T |
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