View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_33 (Length: 239)
Name: NF17638_low_33
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_33 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 18 - 226
Target Start/End: Original strand, 33039620 - 33039828
Alignment:
| Q |
18 |
actgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgccttataattatttacaataaacattttggt |
117 |
Q |
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| T |
33039620 |
actgagatagtattagaaattttaaattctgtgacatggttggtttttaatcaattaaatatattcttgctttataattatttccaataaacattttagt |
33039719 |
T |
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| Q |
118 |
tagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaattagtgtctaacacgt |
217 |
Q |
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||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33039720 |
tagtgttgtttagttagagtccactaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaattagtgtctaacacgt |
33039819 |
T |
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| Q |
218 |
gttgatgat |
226 |
Q |
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||| ||||| |
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| T |
33039820 |
gttcatgat |
33039828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 18 - 220
Target Start/End: Original strand, 39953402 - 39953615
Alignment:
| Q |
18 |
actgagatagtattagaaattttaaattctgtgacatggttggttttta--atcaattaaatatattct----------tgccttataattatttacaat |
105 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||| ||| |||||||||||||| || |
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| T |
39953402 |
actgagatagtattagaaattttaaattctgtgactaaattggtttttataatcaattaaatatattctcatgcttccttgctttataattatttaccat |
39953501 |
T |
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| Q |
106 |
aaacattttggttagtgttgtttagttagagtccattaaagatactctcagttttgataagtattcatgatgataatgtctttttctattttctaattag |
205 |
Q |
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||||||||| ||||||||||||||||||||||||| | ||||||||| ||||||||| |||||||||||| ||||||||||||||||| |||||||||| |
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| T |
39953502 |
aaacattttagttagtgttgtttagttagagtccac-agagatactcttagttttgatgagtattcatgattataatgtctttttctatgttctaattag |
39953600 |
T |
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| Q |
206 |
tgtctaacacgtgtt |
220 |
Q |
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||||||||||||||| |
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| T |
39953601 |
tgtctaacacgtgtt |
39953615 |
T |
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