View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_35 (Length: 220)
Name: NF17638_low_35
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_35 |
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Alignment Details
Target: chr7 (Bit Score: 178; Significance: 4e-96; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 178; E-Value: 4e-96
Query Start/End: Original strand, 1 - 214
Target Start/End: Original strand, 33761730 - 33761943
Alignment:
| Q |
1 |
tgagaagaaattgttggtcaaattcattatcaagaataaaagaagtattctgatacaaaattgcagcatcattgcctgatgcaaacaacttcacaagctt |
100 |
Q |
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| T |
33761730 |
tgagaagaaattgttggtaaaattcattatcaagaataaaagaagtcttctaatacaaaattgcagcatcattgcctgattcaaacaatttcacaagctt |
33761829 |
T |
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| Q |
101 |
agtcggaacattgtattttggtcctccggataagtccaaaacatctcttctagcaagtgttaagatgtctgcacatgatattgttgaaggtcaaataact |
200 |
Q |
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| T |
33761830 |
agtcggaacattgtattttggtcctccggataaggccaaaacatctcttctagaaagtgttaagatgtctgcacatgatattgttgaaggacaaataact |
33761929 |
T |
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| Q |
201 |
tcgatcgtttcctt |
214 |
Q |
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||||| |||||||| |
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| T |
33761930 |
tcgattgtttcctt |
33761943 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 35 - 214
Target Start/End: Original strand, 33755788 - 33755967
Alignment:
| Q |
35 |
aataaaagaagtattctgatacaaaattgcagcatcattgcctgatgcaaacaacttcacaagcttagtcggaacattgtattttggtcctccggataag |
134 |
Q |
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| T |
33755788 |
aataaaagaagtattctaatccaaaaatgcagcaccattacctgattcaaacaaattcacaagcttagtcggaacattgtattttggtcctccggataag |
33755887 |
T |
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| Q |
135 |
tccaaaacatctcttctagcaagtgttaagatgtctgcacatgatattgttgaaggtcaaataacttcgatcgtttcctt |
214 |
Q |
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| T |
33755888 |
gccagaacatctgttctagccagtgttataatgtctgcacatgatactgttaaaggacaaataacttctattgtttcctt |
33755967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 33764120 - 33764193
Alignment:
| Q |
105 |
ggaacattgtattttggtcctccggataagtccaaaacatctcttctagcaagtgttaagatgtctgcacatga |
178 |
Q |
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| T |
33764120 |
ggaatattgtattttggtcctccagataaggccacagcatctcttgtagcaagtgctacgatgtctgcacatga |
33764193 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 33763801 - 33763849
Alignment:
| Q |
20 |
aaattcattatcaagaataaaagaagtattctgatacaaaattgcagca |
68 |
Q |
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| T |
33763801 |
aaattcattatcaacagtaaaagaagtattctgatccaaaaatgcagca |
33763849 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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