View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF17638_low_36 (Length: 218)
Name: NF17638_low_36
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_36 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 125; Significance: 1e-64; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 125; E-Value: 1e-64
Query Start/End: Original strand, 14 - 150
Target Start/End: Original strand, 12046505 - 12046641
Alignment:
| Q |
14 |
cagacacttcattcatttatcataagcaatgaaattttaaccactagactagttgacaaaaattgtgttgacatcaattgatgcattcaagaacaaaaat |
113 |
Q |
| |
|
||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
12046505 |
cagacacttcattcattcatcataagcgatgaaattttaaccactagactagttgacaaaaattgtgttgacattaattgatgcattcaagaacaaaaat |
12046604 |
T |
|
| Q |
114 |
ggatgtttaccgaataagtattgttaaaagtttctct |
150 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12046605 |
ggatgtttaccgaataagtattgttaaaagtttctct |
12046641 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 109
Target Start/End: Original strand, 12068848 - 12068943
Alignment:
| Q |
17 |
acacttcattcatttatcataagcaatgaaattttaaccactagactagttg---acaaaaattgtgttgacatcaattgatgcattcaagaacaa |
109 |
Q |
| |
|
|||| ||||| ||| |||||||| || ||||||||||||||| |||||||| | ||||||| || ||||||||||| |||||||||||||||| |
|
|
| T |
12068848 |
acacctcatttattcatcataagagataaaattttaaccactaaactagttgaaaaaaaaaattatgatgacatcaattaatgcattcaagaacaa |
12068943 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 97 - 146
Target Start/End: Original strand, 12068961 - 12069011
Alignment:
| Q |
97 |
cattcaagaacaaaa-atggatgtttaccgaataagtattgttaaaagttt |
146 |
Q |
| |
|
||||||||||||||| ||||||| |||| |||||||||||||||||||||| |
|
|
| T |
12068961 |
cattcaagaacaaaaaatggatgcttactgaataagtattgttaaaagttt |
12069011 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University