View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17638_low_4 (Length: 527)

Name: NF17638_low_4
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17638_low_4
NF17638_low_4
[»] chr5 (5 HSPs)
chr5 (20-517)||(12596684-12597178)
chr5 (24-101)||(20813687-20813764)
chr5 (24-101)||(20840126-20840203)
chr5 (35-100)||(30419705-30419770)
chr5 (24-101)||(15804949-15805026)
[»] chr8 (10 HSPs)
chr8 (24-100)||(3405837-3405913)
chr8 (446-517)||(3313795-3313866)
chr8 (24-101)||(3319567-3319644)
chr8 (24-101)||(3365986-3366063)
chr8 (24-74)||(31177715-31177765)
chr8 (24-101)||(3389359-3389436)
chr8 (24-101)||(3396886-3396963)
chr8 (24-101)||(3430248-3430327)
chr8 (453-491)||(3392654-3392692)
chr8 (175-251)||(3313976-3314051)
[»] chr7 (1 HSPs)
chr7 (42-101)||(8370224-8370283)
[»] chr2 (1 HSPs)
chr2 (42-101)||(14765836-14765895)
[»] scaffold0468 (1 HSPs)
scaffold0468 (24-99)||(3382-3457)
[»] chr3 (1 HSPs)
chr3 (24-100)||(6903991-6904067)


Alignment Details
Target: chr5 (Bit Score: 468; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 468; E-Value: 0
Query Start/End: Original strand, 20 - 517
Target Start/End: Complemental strand, 12597178 - 12596684
Alignment:
Q  20 caagccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatcactgtgtcttccttgtaaa 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||    
T  12597178 caagccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttgatattaaaccttgccaatcttcatcactgtgtcttgcttgtaaa 12597079  T
Q  120 tctggatagtgaattttatcattatgttcctctttcttcttcttctatatcatgaactaacttcaccaaagacttgagttgttacatgaagccacatgaa 219  Q
    ||||||||||||||||||| |||||||||||||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12597078 tctggatagtgaattttattattatgttcctctttcttcttct---atatcatgaactaacttcaccaaagacttgagttgttacatgaagccacatgaa 12596982  T
Q  220 tggaaatttagattagatttttaaaatggacaacataaaaattctttgtacaaagagaaacacttgtgagatattgaaaccaaacacaaaaagtccatgt 319  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596981 tggaaatttagattagatttttaaaatggacaacataaaaattctttgtacaaagagaaacacttgtgagatattgaaaccaaacacaaaaagtccatgt 12596882  T
Q  320 tcaaagacaagcacttgtgacataatgaaaccaaacatagttgttttcagccaattgatgggaaaagtaaaaaatattttaagaacaaacacagctgctg 419  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  12596881 tcaaagacaagcacttgtgacataatgaaaccaaacatagttgttttcagccaattgatgggaaaagttaaaaatattttaagaacaaacacagctgctg 12596782  T
Q  420 tatctttaatgatcatgtaagataataaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat 517  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12596781 tatctttaatgatcatgtaagataataaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat 12596684  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 20813764 - 20813687
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    ||||| ||||||||||| ||||||||||||||||||||||||   |||||| | | || ||||| |||||||||||||    
T  20813764 ccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacactacaccttcccaatcttcatca 20813687  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 20840203 - 20840126
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    ||||| ||||||||||| ||||||||||||||||||||||||   |||||| | | || ||||| |||||||||||||    
T  20840203 ccatgcccaatagctacaaaaatctccacattgtcaccaacttttaaatttgacaatacaccttcccaatcttcatca 20840126  T

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Target: chr5; HSP #4
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 35 - 100
Target Start/End: Complemental strand, 30419770 - 30419705
Alignment:
Q  35 agctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatc 100  Q
    |||||| |||||||||| |||||||||| |||| |||||| || ||| ||| ||||||||||||||    
T  30419770 agctacaaaaatctccatattgtcaccagctcctaaatttgattttacaccctgccaatcttcatc 30419705  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 15805026 - 15804949
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    ||||| |||| |||||| || || |||||||||| ||||||||| |||||| | | ||  ||||||||||||||||||    
T  15805026 ccatgcccaacagctacaaatatttccacattgttaccaactcctaaatttgacactatgccttgccaatcttcatca 15804949  T

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Target: chr8 (Bit Score: 45; Significance: 2e-16; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 3405837 - 3405913
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatc 100  Q
    ||||| |||| |||||| |||||||||||||||||||||||||| |||||| ||| || ||||| ||||||||||||    
T  3405837 ccatgcccaaaagctacaaaaatctccacattgtcaccaactcctaaatttgatactacaccttcccaatcttcatc 3405913  T

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Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 446 - 517
Target Start/End: Complemental strand, 3313866 - 3313795
Alignment:
Q  446 aaaagaaattcaaaacacgatgtagagaaattcttacggtatggtcggtcaatacatcaactacatcttcat 517  Q
    |||| ||||||||||  | ||||||| |||||||||| ||||||||||||| ||||||||||||||| ||||    
T  3313866 aaaataaattcaaaatgcaatgtagataaattcttacagtatggtcggtcagtacatcaactacatcctcat 3313795  T

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Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 3319644 - 3319567
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    |||||||||||| |||| |||||||||| ||||||||||||||| || ||| |||  |  ||||||||||||||||||    
T  3319644 ccatgtccaataactacaaaaatctccaaattgtcaccaactcctaattttgatacgacgccttgccaatcttcatca 3319567  T

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Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 3366063 - 3365986
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    ||||| ||||||||||| |||||||||| ||||| ||||||||| |||||| | | ||  ||||||||||||||||||    
T  3366063 ccatgcccaatagctacaaaaatctccaaattgttaccaactcctaaatttgacactatgccttgccaatcttcatca 3365986  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 24 - 74
Target Start/End: Complemental strand, 31177765 - 31177715
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaattt 74  Q
    ||||| ||||||||||| |||| |||||||||||||||||| |||||||||    
T  31177765 ccatgcccaatagctacaaaaacctccacattgtcaccaacaccaaaattt 31177715  T

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Target: chr8; HSP #6
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 3389359 - 3389436
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    ||||| ||||||| ||| |||||||||||||||||||||||||| || ||| |||  |   |||||||||||||||||    
T  3389359 ccatgcccaatagatacaaaaatctccacattgtcaccaactcctaattttgataccacgtcttgccaatcttcatca 3389436  T

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Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 24 - 101
Target Start/End: Original strand, 3396886 - 3396963
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    ||||| ||||||||||| |||||||||||||||||| |||||   |||||| | | || ||||| |||||||||||||    
T  3396886 ccatgcccaatagctacaaaaatctccacattgtcatcaacttttaaatttgacactacaccttcccaatcttcatca 3396963  T

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Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 24 - 101
Target Start/End: Complemental strand, 3430327 - 3430248
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatatt--aaaccttgccaatcttcatca 101  Q
    ||||| |||| |||||| ||| |||||||||||||||||||||| |||||| ||| |  | || ||||||||||||||||    
T  3430327 ccatgcccaaaagctacaaaattctccacattgtcaccaactcctaaatttgatactacacactttgccaatcttcatca 3430248  T

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Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 453 - 491
Target Start/End: Original strand, 3392654 - 3392692
Alignment:
Q  453 attcaaaacacgatgtagagaaattcttacggtatggtc 491  Q
    |||||||| || |||||||||||||||||||||||||||    
T  3392654 attcaaaatacaatgtagagaaattcttacggtatggtc 3392692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 251
Target Start/End: Complemental strand, 3314051 - 3313976
Alignment:
Q  175 actaacttcaccaaagacttgagttgttacatgaagccacatgaatggaaatttagattagatttttaaaatggaca 251  Q
    ||||||||| ||||| | |||||||||||||||||| | |||| ||| || |||| |||| |||||||| |||||||    
T  3314051 actaacttctccaaaaa-ttgagttgttacatgaagacccatgtatgaaactttatattatatttttaacatggaca 3313976  T

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Target: chr7 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 8370224 - 8370283
Alignment:
Q  42 aaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    |||||||||||||||||||||||||| |||||| ||| || |||||||||||||||||||    
T  8370224 aaaatctccacattgtcaccaactcctaaatttgatactacaccttgccaatcttcatca 8370283  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 42 - 101
Target Start/End: Original strand, 14765836 - 14765895
Alignment:
Q  42 aaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatca 101  Q
    |||||||| ||||||||||||||||| |||||| ||  || |||||||||||||||||||    
T  14765836 aaaatctcaacattgtcaccaactcctaaatttgatgctacaccttgccaatcttcatca 14765895  T

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Target: scaffold0468 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 24 - 99
Target Start/End: Original strand, 3382 - 3457
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcat 99  Q
    ||||| |||| |||||| |||||| |||||||||| |||||| | |||||| |||||| ||  |||||||||||||    
T  3382 ccatgcccaaaagctacaaaaatccccacattgtccccaactgctaaatttgatattacactctgccaatcttcat 3457  T

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Target: chr3 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 24 - 100
Target Start/End: Original strand, 6903991 - 6904067
Alignment:
Q  24 ccatgtccaatagctacgaaaatctccacattgtcaccaactccaaaatttaatattaaaccttgccaatcttcatc 100  Q
    ||||| |||| |||||| |||||| ||||| |||| |||||| | |||||| |||||| ||  ||||||||||||||    
T  6903991 ccatgcccaaaagctacaaaaatccccacactgtccccaactgctaaatttgatattacactctgccaatcttcatc 6904067  T

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