View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_5 (Length: 478)
Name: NF17638_low_5
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_5 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 377; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 377; E-Value: 0
Query Start/End: Original strand, 1 - 478
Target Start/End: Original strand, 10563003 - 10563470
Alignment:
| Q |
1 |
caggaaatgagccattctaaaaatttagcaaatttaaagtaagagtttaaggctatgtgtgtg--atggaactaagtggaacagatgggacacccctaac |
98 |
Q |
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| T |
10563003 |
caggaaatgagccattctaaaaatttagcaaatttaaagtaaaagtttaaggctatgtgtgtgtgatggaactaagtggaaca-atgggacacccctaac |
10563101 |
T |
|
| Q |
99 |
caccaaatcatatcccaagtgaacaagcacttgttagaccacagaatgaggtaaaagaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctag |
198 |
Q |
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| T |
10563102 |
caccaaatcatatcccaagtgaacaagcacttgttagaccacagaatgaggtaaaagaaaagtcaacaagtaaggtaagacaaaaggaggaaattcctag |
10563201 |
T |
|
| Q |
199 |
acacttctttttaactagccaatgaatcactatgaaacacgaacacaaacacatggccggacaccagacaaaatgctgacaatgatatgtctagacccca |
298 |
Q |
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||| |||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10563202 |
acatttctttttaactagcccatgaatcactatgaaacacgaacacaaacacatggacggacaccagacaaaatgctgacaatgatatgtctagacccca |
10563301 |
T |
|
| Q |
299 |
agtaattgaatgtaactacacgagatcacaagtaattgagtgtaactacatgtgtaggtg-tgttttaatgtctaaaaccagacatgtcttaaatctgaa |
397 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| || |
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| T |
10563302 |
agtaattgaatgtaactacacgagatcacaagtaattgagtgtaactacatgtgtaggtgttgttttaatgtctaaaaccagacatgtcttaaatccaaa |
10563401 |
T |
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| Q |
398 |
gtgtcagtgctacatagtacataacatagaagctaatcacatatgagtagagacaatacaatataggtaactaagaaaaga |
478 |
Q |
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||||| ||||| ||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
10563402 |
gtgtcggtgct------------acatagaagctaatcacatatgagtagagacaagacgatataggtaactaagaaaaga |
10563470 |
T |
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