View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17638_low_6 (Length: 462)

Name: NF17638_low_6
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17638_low_6
NF17638_low_6
[»] chr4 (28 HSPs)
chr4 (84-445)||(2330490-2330826)
chr4 (112-168)||(7148750-7148807)
chr4 (112-167)||(28663407-28663463)
chr4 (126-164)||(36740886-36740924)
chr4 (112-165)||(52274171-52274225)
chr4 (112-164)||(488435-488488)
chr4 (112-167)||(54412098-54412154)
chr4 (126-173)||(34633513-34633560)
chr4 (112-166)||(39932805-39932860)
chr4 (126-165)||(43136683-43136722)
chr4 (127-170)||(48238055-48238098)
chr4 (112-173)||(28074338-28074400)
chr4 (134-164)||(35124355-35124385)
chr4 (134-164)||(35405653-35405683)
chr4 (134-167)||(3564185-3564218)
chr4 (137-166)||(3564354-3564383)
chr4 (134-167)||(9153670-9153703)
chr4 (137-170)||(21216392-21216425)
chr4 (135-164)||(22273761-22273790)
chr4 (138-171)||(38345727-38345760)
chr4 (134-167)||(38345909-38345942)
chr4 (134-167)||(52700631-52700664)
chr4 (117-168)||(825795-825847)
chr4 (137-165)||(948223-948251)
chr4 (134-170)||(1374451-1374487)
chr4 (134-166)||(12022987-12023019)
chr4 (134-166)||(32628747-32628779)
chr4 (15-59)||(36498654-36498698)
[»] chr5 (14 HSPs)
chr5 (112-166)||(1942990-1943045)
chr5 (87-179)||(42706763-42706862)
chr5 (126-173)||(28625453-28625500)
chr5 (112-166)||(40696981-40697036)
chr5 (121-169)||(41419619-41419667)
chr5 (134-165)||(1372081-1372112)
chr5 (112-173)||(6125260-6125322)
chr5 (134-168)||(11163357-11163391)
chr5 (134-172)||(28970166-28970204)
chr5 (134-171)||(3520590-3520627)
chr5 (112-160)||(10274260-10274309)
chr5 (134-167)||(31637164-31637197)
chr5 (137-173)||(1576779-1576815)
chr5 (137-173)||(1608000-1608036)
[»] chr1 (15 HSPs)
chr1 (88-166)||(28870204-28870283)
chr1 (126-171)||(45267440-45267485)
chr1 (126-167)||(36178515-36178556)
chr1 (115-160)||(38781059-38781104)
chr1 (137-168)||(7145207-7145238)
chr1 (27-69)||(7537050-7537092)
chr1 (134-164)||(26946193-26946223)
chr1 (134-172)||(26988117-26988155)
chr1 (134-167)||(16225474-16225507)
chr1 (128-173)||(48819272-48819317)
chr1 (20-65)||(49315794-49315839)
chr1 (137-165)||(994622-994650)
chr1 (137-165)||(26946014-26946042)
chr1 (137-165)||(26988296-26988324)
chr1 (126-166)||(37431146-37431186)
[»] chr2 (10 HSPs)
chr2 (117-168)||(9140651-9140703)
chr2 (134-168)||(38215987-38216021)
chr2 (126-167)||(17317158-17317199)
chr2 (128-168)||(18276909-18276949)
chr2 (141-173)||(29774897-29774929)
chr2 (114-164)||(37419899-37419950)
chr2 (14-56)||(14818703-14818745)
chr2 (121-158)||(35997287-35997324)
chr2 (14-50)||(1208617-1208653)
chr2 (134-166)||(12223981-12224013)
[»] scaffold0015 (1 HSPs)
scaffold0015 (112-167)||(48823-48878)
[»] chr8 (12 HSPs)
chr8 (134-173)||(32131399-32131438)
chr8 (112-165)||(34286614-34286668)
chr8 (117-169)||(9130937-9130990)
chr8 (112-168)||(28879036-28879093)
chr8 (126-165)||(9781196-9781235)
chr8 (137-168)||(11460796-11460827)
chr8 (129-168)||(18396914-18396953)
chr8 (134-167)||(2019737-2019770)
chr8 (112-160)||(32213073-32213122)
chr8 (137-165)||(11460851-11460879)
chr8 (135-167)||(19925477-19925509)
chr8 (128-168)||(35168359-35168399)
[»] chr7 (12 HSPs)
chr7 (112-165)||(47511024-47511078)
chr7 (112-172)||(29378619-29378680)
chr7 (134-166)||(30181516-30181548)
chr7 (121-164)||(29778433-29778476)
chr7 (134-165)||(38372525-38372556)
chr7 (134-172)||(22515595-22515633)
chr7 (112-170)||(14691350-14691409)
chr7 (112-160)||(33288150-33288199)
chr7 (137-169)||(1053974-1054006)
chr7 (112-167)||(1054119-1054175)
chr7 (137-165)||(23119850-23119878)
chr7 (137-165)||(29390461-29390489)
[»] chr6 (5 HSPs)
chr6 (112-168)||(2034280-2034337)
chr6 (14-81)||(6793464-6793531)
chr6 (134-168)||(11795524-11795558)
chr6 (112-168)||(21025278-21025335)
chr6 (137-165)||(25430854-25430882)
[»] scaffold0071 (1 HSPs)
scaffold0071 (133-168)||(18101-18136)
[»] chr3 (9 HSPs)
chr3 (133-168)||(15444055-15444090)
chr3 (134-165)||(29270328-29270359)
chr3 (134-165)||(34707801-34707832)
chr3 (125-164)||(37601092-37601131)
chr3 (112-169)||(45331346-45331404)
chr3 (121-155)||(52421070-52421104)
chr3 (125-166)||(35480447-35480488)
chr3 (134-166)||(10272088-10272120)
chr3 (137-165)||(35480312-35480340)
[»] scaffold0022 (1 HSPs)
scaffold0022 (120-169)||(89313-89362)
[»] scaffold0024 (1 HSPs)
scaffold0024 (134-166)||(97115-97147)


Alignment Details
Target: chr4 (Bit Score: 152; Significance: 3e-80; HSPs: 28)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 152; E-Value: 3e-80
Query Start/End: Original strand, 84 - 445
Target Start/End: Original strand, 2330490 - 2330826
Alignment:
Q  84 tgcttttttataaactaccttgacaaatataatacata-aaatttatttacttgcataagctcaaaaataagtcaatccaaacgggtcctaggtcaaaaa 182  Q
    |||||||  ||||||||| ||||||||||||||||||| ||||||||||||||    ||||| |||||||||||||||||| |||| |||||||||| ||    
T  2330490 tgcttttacataaactacattgacaaatataatacatataaatttatttactt----aagctaaaaaataagtcaatccaagcgggccctaggtcaataa 2330585  T
Q  183 gtgacacatttnnnnnnnnnnnnnnnctctaaaataaatgatggtttccactttaatgtaattttaattatttattttcttgagcaagtatatcatcttg 282  Q
    |||||||||||                 || ||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2330586 gtgacacattttgtaaaaaaa-------ctgaaataaatgatggttttaactttaatgtaattttaattatttattttcttgagcaagtatatcatcttg 2330678  T
Q  283 tttttaatgtgtgtaaaatggtagaatgagaaaattattcaaaaatattgaaagtatttaatagcagtatgatcttaaatctttcttctcatgtatacgc 382  Q
    |||||||||||||| |||||||| ||||  |||||||||| ||||||||| ||||| ||||||||| ||||||||||||||||||||||||             
T  2330679 tttttaatgtgtgtgaaatggtaaaatgcaaaaattattctaaaatattggaagtagttaatagcattatgatcttaaatctttcttctca--------- 2330769  T
Q  383 tgacagtgtatatgcttgagcaggtggatcattggtgttggagagaaatgatagcttggaaga 445  Q
          |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  2330770 ------tgtatatggttgagcaggtggatcattggtgttggagagaaatgatagcttgcaaga 2330826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 7148807 - 7148750
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| |||||||||||||    
T  7148807 ataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaacggg 7148750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 167
Target Start/End: Complemental strand, 28663463 - 28663407
Alignment:
Q  112 ataatacataaaattt-atttacttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    |||||||||||||  | ||||| ||||||||||||||||||||||||||||||||||    
T  28663463 ataatacataaaagctcatttatttgcataagctcaaaaataagtcaatccaaacgg 28663407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 126 - 164
Target Start/End: Complemental strand, 36740924 - 36740886
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaa 164  Q
    ||||||| |||||||||||||||||||||||||||||||    
T  36740924 ttatttatttgcataagctcaaaaataagtcaatccaaa 36740886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 52274171 - 52274225
Alignment:
Q  112 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||||||||| |||||||| ||||||||||||||||||||| |||| |||||    
T  52274171 ataatacataaaagtttatttatttgcataagctcaaaaataagccaattcaaac 52274225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 164
Target Start/End: Original strand, 488435 - 488488
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||||||||  ||| ||| |||||||||||||||||||||||||||||||    
T  488435 ataatacataaaagcttacttatttgcataagctcaaaaataagtcaatccaaa 488488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 54412098 - 54412154
Alignment:
Q  112 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||||||||| |||||||| ||||||||| | ||||||||| ||||||||||||    
T  54412098 ataatacataaaaatttatttatttgcataagttaaaaaataagccaatccaaacgg 54412154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 173
Target Start/End: Original strand, 34633513 - 34633560
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    ||||||| |||| |||||| |||||||||||||||||||| |||||||    
T  34633513 ttatttatttgcgtaagcttaaaaataagtcaatccaaacaggtccta 34633560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 112 - 166
Target Start/End: Original strand, 39932805 - 39932860
Alignment:
Q  112 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||||||||| |||||||| ||||||||| | ||||||||||||||| |||||    
T  39932805 ataatacataaaagtttatttatttgcataagtttaaaaataagtcaatcgaaacg 39932860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Original strand, 43136683 - 43136722
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||| | ||||||||||||||||||||||||||||||    
T  43136683 ttatttattcgcataagctcaaaaataagtcaatccaaac 43136722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 127 - 170
Target Start/End: Complemental strand, 48238098 - 48238055
Alignment:
Q  127 tatttacttgcataagctcaaaaataagtcaatccaaacgggtc 170  Q
    |||||| |||||||| ||||||||||||||||| ||||||||||    
T  48238098 tatttatttgcataaactcaaaaataagtcaattcaaacgggtc 48238055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 28074400 - 28074338
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    |||||||||||||  ||||||| ||||||||||  ||||||||||||||||||| ||| ||||    
T  28074400 ataatacataaaagcttatttatttgcataagcgaaaaaataagtcaatccaaatgggcccta 28074338  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 35124385 - 35124355
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||||||||||||||||||||||||||    
T  35124385 ttgcataagctcaaaaataagtcaatccaaa 35124355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Complemental strand, 35405683 - 35405653
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||||||||||||||||||||||||||    
T  35405683 ttgcataagctcaaaaataagtcaatccaaa 35405653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 3564218 - 3564185
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||||||||||||| ||||||||||||||||    
T  3564218 ttgcataagctcaaaaacaagtcaatccaaacgg 3564185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 166
Target Start/End: Original strand, 3564354 - 3564383
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||||||||||||||||||||||||||    
T  3564354 cataagctcaaaaataagtcaatccaaacg 3564383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 9153670 - 9153703
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    |||||||||||| |||||||||||||||||||||    
T  9153670 ttgcataagctctaaaataagtcaatccaaacgg 9153703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 137 - 170
Target Start/End: Original strand, 21216392 - 21216425
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacgggtc 170  Q
    |||||||| |||||||||||||||||||||||||    
T  21216392 cataagctaaaaaataagtcaatccaaacgggtc 21216425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 135 - 164
Target Start/End: Complemental strand, 22273790 - 22273761
Alignment:
Q  135 tgcataagctcaaaaataagtcaatccaaa 164  Q
    ||||||||||||||||||||||||||||||    
T  22273790 tgcataagctcaaaaataagtcaatccaaa 22273761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 171
Target Start/End: Complemental strand, 38345760 - 38345727
Alignment:
Q  138 ataagctcaaaaataagtcaatccaaacgggtcc 171  Q
    ||||||||||||||||| ||||||||||||||||    
T  38345760 ataagctcaaaaataagccaatccaaacgggtcc 38345727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 38345909 - 38345942
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||||||||||| ||||||||||||||||||    
T  38345909 ttgcataagctcaaacataagtcaatccaaacgg 38345942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 52700631 - 52700664
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    |||||||||||| |||||||||||||||||||||    
T  52700631 ttgcataagctctaaaataagtcaatccaaacgg 52700664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 117 - 168
Target Start/End: Original strand, 825795 - 825847
Alignment:
Q  117 acataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||| ||||||| ||||||||||| |||||| || |||||||||||||    
T  825795 acataaaatcttatttatttgcataagctaaaaaattagccaatccaaacggg 825847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 948223 - 948251
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  948223 cataagctcaaaaataagtcaatccaaac 948251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 170
Target Start/End: Original strand, 1374451 - 1374487
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgggtc 170  Q
    ||||||||||||||||||||| ||||||||| |||||    
T  1374451 ttgcataagctcaaaaataagccaatccaaatgggtc 1374487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 12023019 - 12022987
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacg 166  Q
    |||||||||||| ||||||||||||||||||||    
T  12023019 ttgcataagctctaaaataagtcaatccaaacg 12022987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 32628779 - 32628747
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||||||||||||||||| |||||||||||    
T  32628779 ttgcataagctcaaaaataagacaatccaaacg 32628747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36498654 - 36498698
Alignment:
Q  15 gagagaattatcggttaagagagaggtagagacaaagtcaccgaa 59  Q
    ||||||||||| |||||  |||||| |||||||||||||||||||    
T  36498654 gagagaattattggttagaagagagatagagacaaagtcaccgaa 36498698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 1943045 - 1942990
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacg 166  Q
    |||||||||||||  ||||||||||||||||||||||||||||| |||||||||||    
T  1943045 ataatacataaaaacttatttacttgcataagctcaaaaataagccaatccaaacg 1942990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 87 - 179
Target Start/End: Complemental strand, 42706862 - 42706763
Alignment:
Q  87 ttttttataaactaccttgacaa----at--ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggtcctaggtcaa 179  Q
    |||||||||||||||||||||||    ||  ||||||| |||||  ||||||| ||||||||||||||||||||| ||||||||||||| |||| |||||    
T  42706862 ttttttataaactaccttgacaagcttatgaataatacttaaaagcttatttatttgcataagctcaaaaataagccaatccaaacgggccctatgtcaa 42706763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 126 - 173
Target Start/End: Complemental strand, 28625500 - 28625453
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    ||||||| ||||||||||| ||||||||||||||||||||||| ||||    
T  28625500 ttatttatttgcataagctaaaaaataagtcaatccaaacgggcccta 28625453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 166
Target Start/End: Complemental strand, 40697036 - 40696981
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacg 166  Q
    |||||||||||||  ||||||| |||||||||||||||||||||||||| ||||||    
T  40697036 ataatacataaaaacttatttatttgcataagctcaaaaataagtcaattcaaacg 40696981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 121 - 169
Target Start/End: Original strand, 41419619 - 41419667
Alignment:
Q  121 aaaatttatttacttgcataagctcaaaaataagtcaatccaaacgggt 169  Q
    |||| ||||||| || ||||||||||||| |||||||||||||||||||    
T  41419619 aaaacttatttattttcataagctcaaaagtaagtcaatccaaacgggt 41419667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 1372081 - 1372112
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||||||||||||||||||||||||||||    
T  1372081 ttgcataagctcaaaaataagtcaatccaaac 1372112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 173
Target Start/End: Complemental strand, 6125322 - 6125260
Alignment:
Q  112 ataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    ||||||||||||| |||||||| || |||||| |||||||||||||||| | |||||| ||||    
T  6125322 ataatacataaaagtttatttatttacataagttcaaaaataagtcaattcgaacgggaccta 6125260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Original strand, 11163357 - 11163391
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||||| |||||||||||||||||||||||    
T  11163357 ttgcataagctaaaaaataagtcaatccaaacggg 11163391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 28970166 - 28970204
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgggtcct 172  Q
    ||||||||||||||||||||| |||||||||| ||||||    
T  28970166 ttgcataagctcaaaaataagccaatccaaacaggtcct 28970204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 171
Target Start/End: Original strand, 3520590 - 3520627
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgggtcc 171  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  3520590 ttgcataagctaaaaaataagtcaatccaaacaggtcc 3520627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Complemental strand, 10274309 - 10274260
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatc 160  Q
    |||||| ||||||| ||||||| |||||||| ||||||||||||||||||    
T  10274309 ataatatataaaatcttatttatttgcataaactcaaaaataagtcaatc 10274260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 31637164 - 31637197
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||||||||| ||||||||||||||||||||    
T  31637164 ttgcataagctcataaataagtcaatccaaacgg 31637197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Original strand, 1576779 - 1576815
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  1576779 cataagctcaaaaataagccaatccaaacgggcccta 1576815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 173
Target Start/End: Complemental strand, 1608036 - 1608000
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    |||||||||||||||||| ||||||||||||| ||||    
T  1608036 cataagctcaaaaataagccaatccaaacgggcccta 1608000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 88 - 166
Target Start/End: Complemental strand, 28870283 - 28870204
Alignment:
Q  88 tttttataaactaccttgacaaatataatacataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacg 166  Q
    |||| |||| |||| |||||||| ||||||||||||  |||||||| ||||||||||||||||||||| ||||| |||||    
T  28870283 ttttcataagctactttgacaaaaataatacataaatgtttatttatttgcataagctcaaaaataagccaatctaaacg 28870204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 45267485 - 45267440
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaacgggtcc 171  Q
    ||||||| |||||||||||||||||||||||||||||||| |||||    
T  45267485 ttatttatttgcataagctcaaaaataagtcaatccaaacaggtcc 45267440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 36178556 - 36178515
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||| |||||||||||||||| |||||||||||||||||    
T  36178556 ttatttatttgcataagctcaaaagtaagtcaatccaaacgg 36178515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 115 - 160
Target Start/End: Complemental strand, 38781104 - 38781059
Alignment:
Q  115 atacataaaatttatttacttgcataagctcaaaaataagtcaatc 160  Q
    |||||||||| ||||||| ||||||||||||||||||||| |||||    
T  38781104 atacataaaacttatttatttgcataagctcaaaaataagccaatc 38781059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Complemental strand, 7145238 - 7145207
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||||||||||||||||||||||||||    
T  7145238 cataagctcaaaaataagtcaatccaaacggg 7145207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 27 - 69
Target Start/End: Original strand, 7537050 - 7537092
Alignment:
Q  27 ggttaagagagaggtagagacaaagtcaccgaactcaaagtca 69  Q
    ||||| ||||||| |||||||||||||||| ||||||||||||    
T  7537050 ggttaggagagagatagagacaaagtcaccaaactcaaagtca 7537092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 164
Target Start/End: Original strand, 26946193 - 26946223
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||||||||||||||||||||||||||    
T  26946193 ttgcataagctcaaaaataagtcaatccaaa 26946223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 172
Target Start/End: Complemental strand, 26988155 - 26988117
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgggtcct 172  Q
    |||||||||||||||||||| |||||||||||| |||||    
T  26988155 ttgcataagctcaaaaataattcaatccaaacgtgtcct 26988117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Complemental strand, 16225507 - 16225474
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    |||||||||||| |||||||||||||||||||||    
T  16225507 ttgcataagctctaaaataagtcaatccaaacgg 16225474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 128 - 173
Target Start/End: Complemental strand, 48819317 - 48819272
Alignment:
Q  128 atttacttgcataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    ||||| ||||||||||||||||||||| ||||||||| ||| ||||    
T  48819317 atttatttgcataagctcaaaaataagccaatccaaatgggcccta 48819272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 20 - 65
Target Start/End: Original strand, 49315794 - 49315839
Alignment:
Q  20 aattatcggttaagagagaggtagagacaaagtcaccgaactcaaa 65  Q
    |||||| | ||| ||||||| |||||||||||||||||||||||||    
T  49315794 aattattgattatgagagagatagagacaaagtcaccgaactcaaa 49315839  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 994650 - 994622
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  994650 cataagctcaaaaataagtcaatccaaac 994622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 26946042 - 26946014
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  26946042 cataagctcaaaaataagtcaatccaaac 26946014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 26988296 - 26988324
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  26988296 cataagctcaaaaataagtcaatccaaac 26988324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 166
Target Start/End: Complemental strand, 37431186 - 37431146
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||| ||||| ||||||||||||||| |||||||||||    
T  37431186 ttatttatttgcacaagctcaaaaataagccaatccaaacg 37431146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 37; Significance: 0.00000000001; HSPs: 10)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 117 - 168
Target Start/End: Complemental strand, 9140703 - 9140651
Alignment:
Q  117 acataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||||||| ||||||||  ||||||||||||||||||||||||||||||||||    
T  9140703 acataaaagtttatttatatgcataagctcaaaaataagtcaatccaaacggg 9140651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 38216021 - 38215987
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||||||||||||||||||||||||||||||||||    
T  38216021 ttgcataagctcaaaaataagtcaatccaaacggg 38215987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 126 - 167
Target Start/End: Complemental strand, 17317199 - 17317158
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||| || |||||||||||||||||||||||||||||||    
T  17317199 ttatttatttacataagctcaaaaataagtcaatccaaacgg 17317158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 18276949 - 18276909
Alignment:
Q  128 atttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||| |||||||||||||||||||||||||||||| ||||    
T  18276949 atttatttgcataagctcaaaaataagtcaatccaagcggg 18276909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 141 - 173
Target Start/End: Original strand, 29774897 - 29774929
Alignment:
Q  141 agctcaaaaataagtcaatccaaacgggtccta 173  Q
    |||||||||||||||||||||||||||||||||    
T  29774897 agctcaaaaataagtcaatccaaacgggtccta 29774929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 114 - 164
Target Start/End: Complemental strand, 37419950 - 37419899
Alignment:
Q  114 aatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||||||  ||||||| |||||||||||||||| ||||||||||||||    
T  37419950 aatacataaaagcttatttatttgcataagctcaaaattaagtcaatccaaa 37419899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 14 - 56
Target Start/End: Complemental strand, 14818745 - 14818703
Alignment:
Q  14 agagagaattatcggttaagagagaggtagagacaaagtcacc 56  Q
    |||||||||||| ||||| ||||||| ||||||||||||||||    
T  14818745 agagagaattattggttatgagagagatagagacaaagtcacc 14818703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 121 - 158
Target Start/End: Complemental strand, 35997324 - 35997287
Alignment:
Q  121 aaaatttatttacttgcataagctcaaaaataagtcaa 158  Q
    |||| ||||||| |||||||||||||||||||||||||    
T  35997324 aaaacttatttatttgcataagctcaaaaataagtcaa 35997287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 50
Target Start/End: Complemental strand, 1208653 - 1208617
Alignment:
Q  14 agagagaattatcggttaagagagaggtagagacaaa 50  Q
    |||||||||||| ||||||||||||| ||||||||||    
T  1208653 agagagaattattggttaagagagagatagagacaaa 1208617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Original strand, 12223981 - 12224013
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||||||||||||||||| |||||||||||    
T  12223981 ttgcataagctcaaaaataagccaatccaaacg 12224013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 48823 - 48878
Alignment:
Q  112 ataatacataaaatttatttacttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||||||||| ||||| | ||| |||||||| |||||||||||||||||||||    
T  48823 ataatacataaaagttattaatttgtataagctcgaaaataagtcaatccaaacgg 48878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 12)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 134 - 173
Target Start/End: Complemental strand, 32131438 - 32131399
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgggtccta 173  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  32131438 ttgcataagctcaaaaataagtcaatccaaatgggtccta 32131399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Original strand, 34286614 - 34286668
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||  ||||||| || |||||||||||||||||||||||||||||    
T  34286614 ataatacataaaagcttatttatttacataagctcaaaaataagtcaatccaaac 34286668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 117 - 169
Target Start/End: Complemental strand, 9130990 - 9130937
Alignment:
Q  117 acataaaa-tttatttacttgcataagctcaaaaataagtcaatccaaacgggt 169  Q
    |||||||| |||||||| ||||||||||||||||  ||||||||||||||||||    
T  9130990 acataaaagtttatttatttgcataagctcaaaatcaagtcaatccaaacgggt 9130937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Complemental strand, 28879093 - 28879036
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| |||| ||||||||    
T  28879093 ataatacataaaagcttatttatttgcataagctcaaaaataagccaattcaaacggg 28879036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 126 - 165
Target Start/End: Complemental strand, 9781235 - 9781196
Alignment:
Q  126 ttatttacttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||| |||||||||||| |||||||||||||||||||    
T  9781235 ttatttatttgcataagctctaaaataagtcaatccaaac 9781196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 168
Target Start/End: Original strand, 11460796 - 11460827
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||||||||||||||||||||||||||    
T  11460796 cataagctcaaaaataagtcaatccaaacggg 11460827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 129 - 168
Target Start/End: Complemental strand, 18396953 - 18396914
Alignment:
Q  129 tttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||| ||||||||||||||||||||| |||||||||||||    
T  18396953 tttatttgcataagctcaaaaataagccaatccaaacggg 18396914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 134 - 167
Target Start/End: Original strand, 2019737 - 2019770
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    |||||||||||| |||||||||||||||||||||    
T  2019737 ttgcataagctctaaaataagtcaatccaaacgg 2019770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 32213073 - 32213122
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatc 160  Q
    |||||||||||||  ||||||| ||||||||||| |||||||||||||||    
T  32213073 ataatacataaaagcttatttatttgcataagcttaaaaataagtcaatc 32213122  T

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Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 11460851 - 11460879
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  11460851 cataagctcaaaaataagtcaatccaaac 11460879  T

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Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 135 - 167
Target Start/End: Original strand, 19925477 - 19925509
Alignment:
Q  135 tgcataagctcaaaaataagtcaatccaaacgg 167  Q
    ||||||||||| |||||||||||||||||||||    
T  19925477 tgcataagctctaaaataagtcaatccaaacgg 19925509  T

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Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 128 - 168
Target Start/End: Complemental strand, 35168399 - 35168359
Alignment:
Q  128 atttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||| || |||||||||||||||||| |||||||||||||    
T  35168399 atttatttacataagctcaaaaataagccaatccaaacggg 35168359  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 112 - 165
Target Start/End: Complemental strand, 47511078 - 47511024
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||  ||||||| ||||||||||||||||||||| ||||||||||    
T  47511078 ataatacataaaagcttatttatttgcataagctcaaaaataagccaatccaaac 47511024  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 172
Target Start/End: Complemental strand, 29378680 - 29378619
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggtcct 172  Q
    |||||||||||||  ||||||| ||||||||||||||| ||||| |||||||||| ||||||    
T  29378680 ataatacataaaagcttatttatttgcataagctcaaagataagccaatccaaacaggtcct 29378619  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 30181548 - 30181516
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacg 166  Q
    |||||||||||||||||||||||||||||||||    
T  30181548 ttgcataagctcaaaaataagtcaatccaaacg 30181516  T

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Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 121 - 164
Target Start/End: Complemental strand, 29778476 - 29778433
Alignment:
Q  121 aaaatttatttacttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||||||| ||||||||||| |||||||||||||| ||||    
T  29778476 aaaatttatttatttgcataagctaaaaaataagtcaattcaaa 29778433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 38372556 - 38372525
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||||||||||||||||||||||||||||    
T  38372556 ttgcataagctcaaaaataagtcaatccaaac 38372525  T

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Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 172
Target Start/End: Original strand, 22515595 - 22515633
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacgggtcct 172  Q
    ||||||||||||||| ||||||||||||||| |||||||    
T  22515595 ttgcataagctcaaatataagtcaatccaaatgggtcct 22515633  T

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Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 170
Target Start/End: Original strand, 14691350 - 14691409
Alignment:
Q  112 ataatacataaaa--tttatttacttgcataagctcaaaaataagtcaatccaaacgggtc 170  Q
    |||||||||||||  |||||||| ||||| ||| ||||||| |||||||||||||||||||    
T  14691350 ataatacataaaagctttatttatttgca-aagttcaaaaacaagtcaatccaaacgggtc 14691409  T

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Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 160
Target Start/End: Original strand, 33288150 - 33288199
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatc 160  Q
    |||||||||||||  ||||||| ||||||||||||||||||| |||||||    
T  33288150 ataatacataaaagcttatttatttgcataagctcaaaaatatgtcaatc 33288199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 169
Target Start/End: Complemental strand, 1054006 - 1053974
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaacgggt 169  Q
    |||| ||||||||||||||||||||||||||||    
T  1054006 catatgctcaaaaataagtcaatccaaacgggt 1053974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 112 - 167
Target Start/End: Original strand, 1054119 - 1054175
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgg 167  Q
    |||||||||||||  ||||||| |||||||||||||||| ||||| ||| |||||||    
T  1054119 ataatacataaaagcttatttatttgcataagctcaaaactaagtgaatacaaacgg 1054175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 23119878 - 23119850
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  23119878 cataagctcaaaaataagtcaatccaaac 23119850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 29390489 - 29390461
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  29390489 cataagctcaaaaataagtcaatccaaac 29390461  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 2034280 - 2034337
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||||||||||||  ||||||| ||||||||||||||||| ||| |||||||||||||    
T  2034280 ataatacataaaagcttatttatttgcataagctcaaaaacaagccaatccaaacggg 2034337  T

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Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 6793531 - 6793464
Alignment:
Q  14 agagagaattatcggttaagagagaggtagagacaaagtcaccgaactcaaagtcatcgaagtgctac 81  Q
    ||||| |||||| ||||| || |||| |||||||||| ||||| ||| ||||||||||||| ||||||    
T  6793531 agagataattattggttaggatagagatagagacaaaatcaccaaacacaaagtcatcgaaatgctac 6793464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 134 - 168
Target Start/End: Complemental strand, 11795558 - 11795524
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||||||| |||||||||||||||||||||    
T  11795558 ttgcataagctcagaaataagtcaatccaaacggg 11795524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 168
Target Start/End: Original strand, 21025278 - 21025335
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    |||||||||||||  ||||||| ||||||||||| |||||| || |||||||||||||    
T  21025278 ataatacataaaagcttatttatttgcataagctaaaaaattagccaatccaaacggg 21025335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Original strand, 25430854 - 25430882
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  25430854 cataagctcaaaaataagtcaatccaaac 25430882  T

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Target: scaffold0071 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Complemental strand, 18136 - 18101
Alignment:
Q  133 cttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||||||||||||||||||||||||| ||||    
T  18136 cttgcataagctcaaaaataagtcaatccaatcggg 18101  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 133 - 168
Target Start/End: Original strand, 15444055 - 15444090
Alignment:
Q  133 cttgcataagctcaaaaataagtcaatccaaacggg 168  Q
    ||||||||||||||||||||||||||||||| ||||    
T  15444055 cttgcataagctcaaaaataagtcaatccaatcggg 15444090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Complemental strand, 29270359 - 29270328
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||||||||||||||||||||||||||||    
T  29270359 ttgcataagctcaaaaataagtcaatccaaac 29270328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 134 - 165
Target Start/End: Original strand, 34707801 - 34707832
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaac 165  Q
    ||||||||||||||||||||||||||||||||    
T  34707801 ttgcataagctcaaaaataagtcaatccaaac 34707832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 125 - 164
Target Start/End: Original strand, 37601092 - 37601131
Alignment:
Q  125 tttatttacttgcataagctcaaaaataagtcaatccaaa 164  Q
    |||||||| |||||||||||| ||||||||||||||||||    
T  37601092 tttatttatttgcataagctctaaaataagtcaatccaaa 37601131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 112 - 169
Target Start/End: Original strand, 45331346 - 45331404
Alignment:
Q  112 ataatacataaaat-ttatttacttgcataagctcaaaaataagtcaatccaaacgggt 169  Q
    |||||||||||||  ||||||| || |||||||| ||||||||| ||||||||||||||    
T  45331346 ataatacataaaaggttatttatttacataagctaaaaaataagccaatccaaacgggt 45331404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 121 - 155
Target Start/End: Complemental strand, 52421104 - 52421070
Alignment:
Q  121 aaaatttatttacttgcataagctcaaaaataagt 155  Q
    |||||||||||| ||||||||||||||||||||||    
T  52421104 aaaatttatttatttgcataagctcaaaaataagt 52421070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 125 - 166
Target Start/End: Original strand, 35480447 - 35480488
Alignment:
Q  125 tttatttacttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||||  |||||||||| |||||||||||||||||||||    
T  35480447 tttatttatctgcataagctaaaaaataagtcaatccaaacg 35480488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 10272120 - 10272088
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||||||||| |||||||||||||||||||||    
T  10272120 ttgcataagctaaaaaataagtcaatccaaacg 10272088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 137 - 165
Target Start/End: Complemental strand, 35480340 - 35480312
Alignment:
Q  137 cataagctcaaaaataagtcaatccaaac 165  Q
    |||||||||||||||||||||||||||||    
T  35480340 cataagctcaaaaataagtcaatccaaac 35480312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0022 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0022
Description:

Target: scaffold0022; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 120 - 169
Target Start/End: Original strand, 89313 - 89362
Alignment:
Q  120 taaaatttatttacttgcataagctcaaaaataagtcaatccaaacgggt 169  Q
    ||||| || |||| ||||||||||| ||||||||||||||||||| ||||    
T  89313 taaaacttttttatttgcataagcttaaaaataagtcaatccaaatgggt 89362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 134 - 166
Target Start/End: Complemental strand, 97147 - 97115
Alignment:
Q  134 ttgcataagctcaaaaataagtcaatccaaacg 166  Q
    ||||| |||||||||||||||||||||||||||    
T  97147 ttgcaaaagctcaaaaataagtcaatccaaacg 97115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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