View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_8 (Length: 450)
Name: NF17638_low_8
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_8 |
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Alignment Details
Target: chr7 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 170 - 449
Target Start/End: Complemental strand, 10093206 - 10092927
Alignment:
| Q |
170 |
gacattaaatttgaaagtgagagtttttt-agaggtattaaccggatccacacaatattgcatttgcagtgaccaaagaagtattaaccctatattaatt |
268 |
Q |
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| T |
10093206 |
gacattaaatttgaaagtgagagtttttttagaggtattaaccggatccacacaatattgcatttgcagtgaccaaagaagtattaaccctatattaatt |
10093107 |
T |
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| Q |
269 |
atctgtttgtggaagatgtgtgctattgacaaaggattttaaggaagaaaaagactattcaagaagatttggctgaaatttcaaacttatatttgggact |
368 |
Q |
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| T |
10093106 |
atctgtttgtggaagatgtgtgctattgacaaaggattttaaggaagaaaaagacgactgaagaagatttggctgaaatttcaaa-ttatatttgggact |
10093008 |
T |
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| Q |
369 |
gcacttaatagaatttgttgtttatataaatgatatggctccttctcagaatttcaattttcattgtttcttttagatgtt |
449 |
Q |
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| T |
10093007 |
gcacttaatagtatttgttgtttatataagtgatatggctccttctcagaatttcaattttcaatatttcttttagatgtt |
10092927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 116; E-Value: 8e-59
Query Start/End: Original strand, 18 - 137
Target Start/End: Complemental strand, 10093333 - 10093214
Alignment:
| Q |
18 |
ctatctttatctttaagtaatcactgaaaatgccctagtcttgctttcaaattttaggtaccacgcaagacttatattaatagtttaatatctcatttgg |
117 |
Q |
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| T |
10093333 |
ctatctttatctttaagtaatcactgaaaatgccctagtcttgctttcaaattttaggtaccacgcaagacttatattaatagtttaatatctcatttgg |
10093234 |
T |
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| Q |
118 |
tccctacaatattgcattca |
137 |
Q |
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| T |
10093233 |
tccctactatattgcattca |
10093214 |
T |
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