View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17638_low_9 (Length: 423)
Name: NF17638_low_9
Description: NF17638
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17638_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 383; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 1 - 407
Target Start/End: Original strand, 15217000 - 15217406
Alignment:
| Q |
1 |
ggttagggttagtggcgcgttatgtgaggaagggttcagtgaggagggttagtggcacgttatggtgaataagggaagatgaggaagtttaattttgatt |
100 |
Q |
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| T |
15217000 |
ggttagggttagtggcgcgttatgtgaggaagggttcagtgaggagggttagtggtgcgttatggtgaataagggaagatgaggaagtttaattttgatt |
15217099 |
T |
|
| Q |
101 |
tattaggtaattggtgttgaaggatgcatgttgatagagggattttatggtataaagtcttagtggcgcgttatggtgaggaggagccgtttgaatgata |
200 |
Q |
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| T |
15217100 |
tattaggtaattggtgttgaaggatgcatgttgatagagggattttatggtataaagtcttagtggcgcgttatggtgaggaggagccgtttgaatgata |
15217199 |
T |
|
| Q |
201 |
ttatttggcataaggaagttcctttgaaagtatccttatttgttcagtgtcttcttcgtaaccgaattccagctaagaataatttatttcggtgagacat |
300 |
Q |
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| T |
15217200 |
ttatttggcataaagaagttcctttgaaagtatccttatttgttcagcgtcttcttcgttaccgaattccagctaagaataatttatttcggtgagacat |
15217299 |
T |
|
| Q |
301 |
ccttcatcgggacactcatctttgtatgtttaggtgtggtttggtggaatcagcggaacatttatttttggtttatccctattttgacagcatctgacat |
400 |
Q |
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| T |
15217300 |
ccttcatcaggacactcatctttgtatgtttaggtgtggtttggtggaatcagcggaacatttatttttggtttatccctattttgacagcatctgacat |
15217399 |
T |
|
| Q |
401 |
cttcttc |
407 |
Q |
| |
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||||||| |
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| T |
15217400 |
cttcttc |
15217406 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 78 - 184
Target Start/End: Original strand, 15216857 - 15216962
Alignment:
| Q |
78 |
gatgaggaagtttaattttgatttattaggtaattggtgttgaaggatgcatgttgatagagggattttatggtataaagtcttagtggcgcgttatggt |
177 |
Q |
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||||||||||||||| |||| |||| || ||||||||||||| || |||||||| |||| |||||||||| ||||||||| ||||||| || ||||||| |
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| T |
15216857 |
gatgaggaagtttaactttgctttactatgtaattggtgttggagaatgcatgtagataaagggatttta-agtataaagttttagtggtgcattatggt |
15216955 |
T |
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| Q |
178 |
gaggagg |
184 |
Q |
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||||||| |
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| T |
15216956 |
gaggagg |
15216962 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 201 - 244
Target Start/End: Complemental strand, 9608981 - 9608938
Alignment:
| Q |
201 |
ttatttggcataaggaagttcctttgaaagtatccttatttgtt |
244 |
Q |
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||||||| ||||||||||||||||||||| |||| ||||||||| |
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| T |
9608981 |
ttatttgacataaggaagttcctttgaaaatatctttatttgtt |
9608938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 145 - 185
Target Start/End: Complemental strand, 21499374 - 21499334
Alignment:
| Q |
145 |
ttatggtataaagtcttagtggcgcgttatggtgaggagga |
185 |
Q |
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|||||||||||||||||||| ||| | |||||||||||||| |
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| T |
21499374 |
ttatggtataaagtcttagttgcgaggtatggtgaggagga |
21499334 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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