View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17639_high_10 (Length: 356)
Name: NF17639_high_10
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17639_high_10 |
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Alignment Details
Target: chr1 (Bit Score: 321; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 321; E-Value: 0
Query Start/End: Original strand, 1 - 346
Target Start/End: Original strand, 22391469 - 22391814
Alignment:
| Q |
1 |
ccaccctttccagatttctgcatctgaaagtagtatttaacatagattaaattggatgttttgtaaaattagtttctacgtgaatttcatccgtttttaa |
100 |
Q |
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| T |
22391469 |
ccaccctttccagattgctgcatctgaaagtagtatttaacatagattaaattggatgttttgtaaaattagtttctacgtgaatttcatccgtttttaa |
22391568 |
T |
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| Q |
101 |
tccatttatttgtatagaaagtgcatatttaaatcttactaacaactgacatatacnnnnnnnaagactaaaacattatttttattgactttagggacta |
200 |
Q |
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| T |
22391569 |
tccatttatttgtatagaaagtgcatatttaaatcttactaacaactgacatatactttttttaagactaaaacattatttttattgactttagggacta |
22391668 |
T |
|
| Q |
201 |
ctagcagtttataaatttcaaatagaggctagtttaaaaacattcaagtatatgaattttataaaataaataatccccaatataggggtataatacttat |
300 |
Q |
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| T |
22391669 |
ctagcagtttataaatttcaaatagaggctagtttaaaaacattcaagtatatgaattttataaaataaataatccccaatataggggtataatacttat |
22391768 |
T |
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| Q |
301 |
gtgccgccttgcactgttgcacatagtatagtatagtatagtataa |
346 |
Q |
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| T |
22391769 |
gtgccgccttgcactgttgcacatagtatagtatagtatagtataa |
22391814 |
T |
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