View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17639_high_15 (Length: 335)

Name: NF17639_high_15
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17639_high_15
NF17639_high_15
[»] chr3 (8 HSPs)
chr3 (1-135)||(21966615-21966748)
chr3 (5-135)||(21966963-21967093)
chr3 (1-135)||(21989051-21989184)
chr3 (5-135)||(21989399-21989529)
chr3 (218-326)||(24047127-24047237)
chr3 (218-326)||(23674851-23674961)
chr3 (218-326)||(23679356-23679466)
chr3 (218-326)||(24051593-24051703)
[»] chr6 (2 HSPs)
chr6 (5-135)||(20487184-20487314)
chr6 (5-135)||(20481689-20481819)
[»] chr8 (3 HSPs)
chr8 (218-326)||(24859182-24859292)
chr8 (10-135)||(24858990-24859115)
chr8 (5-135)||(24860149-24860279)
[»] chr5 (2 HSPs)
chr5 (218-326)||(27205727-27205837)
chr5 (222-326)||(27210192-27210298)
[»] chr4 (2 HSPs)
chr4 (218-326)||(26897314-26897424)
chr4 (218-326)||(26901776-26901886)
[»] chr1 (2 HSPs)
chr1 (218-326)||(26406737-26406847)
chr1 (218-326)||(26411203-26411313)


Alignment Details
Target: chr3 (Bit Score: 115; Significance: 2e-58; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 21966748 - 21966615
Alignment:
Q  1 gcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21966748 gcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaa 21966650  T
Q  101 ggaccaaaatgaaactaaaattaattaagggacca 135  Q
    |||||||||||||||||||||||||||| ||||||    
T  21966649 ggaccaaaatgaaactaaaattaattaaaggacca 21966615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 21966963 - 21967093
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21966963 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21967062  T
Q  105 caaaatgaaactaaaattaattaagggacca 135  Q
    |||||||||||| ||||||||||||||||||    
T  21967063 caaaatgaaacttaaattaattaagggacca 21967093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 21989184 - 21989051
Alignment:
Q  1 gcgaccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaa 100  Q
    ||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  21989184 gcgaccataagcgccacatcagcgaccatgtgtgagactta-catttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaa 21989086  T
Q  101 ggaccaaaatgaaactaaaattaattaagggacca 135  Q
    |||||||||||||||||||||||||||| ||||||    
T  21989085 ggaccaaaatgaaactaaaattaattaaaggacca 21989051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 21989399 - 21989529
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  21989399 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaatgtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 21989498  T
Q  105 caaaatgaaactaaaattaattaagggacca 135  Q
    |||||||||||| ||||||||||||||||||    
T  21989499 caaaatgaaacttaaattaattaagggacca 21989529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 24047127 - 24047237
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  24047127 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 24047226  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  24047227 aacagtataat 24047237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 23674851 - 23674961
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  23674851 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 23674950  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  23674951 aacagtataat 23674961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 23679356 - 23679466
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  23679356 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 23679455  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  23679456 aacagtataat 23679466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 24051593 - 24051703
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||| | ||||| |||||||    
T  24051593 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgttttcgctcaagatcctgc 24051692  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  24051693 aacagtataat 24051703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 107; Significance: 1e-53; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 20487184 - 20487314
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||    
T  20487184 ccataagcgccacatcagcgaccatgtgtgagacttaacgtttcttaattaaagtttgacggaaaggacataaacgatggacggatcttaattaaaggac 20487283  T
Q  105 caaaatgaaactaaaattaattaagggacca 135  Q
    |||||||| ||||||||||||||||||||||    
T  20487284 caaaatgagactaaaattaattaagggacca 20487314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 5 - 135
Target Start/End: Complemental strand, 20481819 - 20481689
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| | ||||||||||||||||| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||    
T  20481819 ccataagcgccacatcagcaaccatgtgtgagacttagcgtttcttaattaaagtttgacggaaaggacataaacgatggacgaatcttaattaaaggac 20481720  T
Q  105 caaaatgaaactaaaattaattaagggacca 135  Q
    |||||||| ||||||||||| ||||||||||    
T  20481719 caaaatgagactaaaattaaataagggacca 20481689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 92; Significance: 1e-44; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 24859182 - 24859292
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||||||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  24859182 aagcagtatgcggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 24859281  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  24859282 aacagtataat 24859292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 10 - 135
Target Start/End: Complemental strand, 24859115 - 24858990
Alignment:
Q  10 agcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggaccaaaa 109  Q
    |||||||||||| || |||||||||||||||||||||||||||| ||| ||| ||| |||| ||| |||||||||||| | |||||||||||||||||||    
T  24859115 agcgccacatcagcgcccatgtgtgagacttaacatttcttaataaatttttaacggaaagaacaaaaacgatggacggagcttaattaaaggaccaaaa 24859016  T
Q  110 tgaaactaaaattaattaagggacca 135  Q
    |||| |||||| ||||||||||||||    
T  24859015 tgaacctaaaaataattaagggacca 24858990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 5 - 135
Target Start/End: Original strand, 24860149 - 24860279
Alignment:
Q  5 ccataagcgccacatcaacgaccatgtgtgagacttaacatttcttaattaatgtttgacgaaaaggacataaacgatggacgaatcttaattaaaggac 104  Q
    ||||||||||||||||| ||||||| ||||||||||||| ||||  ||||||  ||||||| ||||| ||||||||||||||| | ||||||||||||||    
T  24860149 ccataagcgccacatcagcgaccatatgtgagacttaacgtttcaaaattaaaatttgacggaaagggcataaacgatggacggagcttaattaaaggac 24860248  T
Q  105 caaaatgaaactaaaattaattaagggacca 135  Q
    ||||||||  |||||| ||||||||||||||    
T  24860249 caaaatgagtctaaaaataattaagggacca 24860279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 27205837 - 27205727
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  27205837 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 27205738  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  27205737 aacagtataat 27205727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 222 - 326
Target Start/End: Complemental strand, 27210298 - 27210192
Alignment:
Q  222 agtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaaca 319  Q
    |||||| ||||||||||||||  | ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  27210298 agtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgcaata 27210199  T
Q  320 gtataat 326  Q
    |||||||    
T  27210198 gtataat 27210192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 26897424 - 26897314
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26897424 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 26897325  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  26897324 aacagtataat 26897314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 218 - 326
Target Start/End: Complemental strand, 26901886 - 26901776
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  26901886 aagcagtatgtggtgaattcaacaaaatcagtttttcttcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 26901787  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  26901786 aacagtataat 26901776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 76; Significance: 4e-35; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 26406737 - 26406847
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  26406737 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 26406836  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  26406837 aacagtataat 26406847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 218 - 326
Target Start/End: Original strand, 26411203 - 26411313
Alignment:
Q  218 aagcagtatgcggtgaattcaacaa--ttagtttttcttcaatgttcatccatcagtggaagtatagtataaaaagtcacgtttccactcaaaatcctgc 315  Q
    |||||||||| ||||||||||||||  | ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||| ||||| |||||||    
T  26411203 aagcagtatgtggtgaattcaacaaaatcagtttttattcaatgttcatccaccagtggaagtatagtataaaaagtcacgtttccgctcaagatcctgc 26411302  T
Q  316 aacagtataat 326  Q
    |||||||||||    
T  26411303 aacagtataat 26411313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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