View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17639_high_18 (Length: 328)
Name: NF17639_high_18
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17639_high_18 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 11 - 328
Target Start/End: Complemental strand, 32164819 - 32164502
Alignment:
| Q |
11 |
atatgaaagctcaatgagttattattgactctcgagctagacaatcttgcttctaccacaaggccatttactaactctgctgatcttttggtcactttac |
110 |
Q |
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| T |
32164819 |
atatgaaagctcaatgagttattattgactctcgagctagacaatcttgcttctactacaaggccatttactaactctgctgatcttttggtcactttac |
32164720 |
T |
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| Q |
111 |
ctcctcggacccatcagctcctgccaagctcttcgattcttatgcctgaacggttatctccagctttacaagactcaatttcagaacatgcacatctgcg |
210 |
Q |
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| T |
32164719 |
ctcctcgaacccatcagcttctgccaagctcttcgaatcttatgcctgaacggttatctccagctttacaagactcattttcagaacatgcacatctccg |
32164620 |
T |
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| Q |
211 |
gtagggtgattataaaaccagtccagctgcttgttaagaaggtaatttttctttatgatcacacacgatcatgaaaaaagtagatatgatcaaactgcca |
310 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
32164619 |
gtagggtgattataaaaccagtccagctgcttgttaagaaggtaatttttctttatgatcacacacgatcatgagcaaagtagatatgatcaaactgcca |
32164520 |
T |
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| Q |
311 |
cattgacatgtgtagtat |
328 |
Q |
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|||||||||||||||||| |
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| T |
32164519 |
cattgacatgtgtagtat |
32164502 |
T |
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