View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17639_high_1_N (Length: 663)
Name: NF17639_high_1_N
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17639_high_1_N |
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Alignment Details
Target: chr1 (Bit Score: 178; Significance: 1e-95; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 178; E-Value: 1e-95
Query Start/End: Original strand, 447 - 637
Target Start/End: Original strand, 50648049 - 50648241
Alignment:
| Q |
447 |
ttgaaaacagcaaattgatgaaaaaccaaaagag--aggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaa |
544 |
Q |
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| T |
50648049 |
ttgaaaacagcaaattgatgaaaaaccaaaagagagaggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaa |
50648148 |
T |
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| Q |
545 |
ccttgtcgttttcaatttactggagctgctgcggatggaacgcgacagagggttgaaatgggtaccgagaaggaggttgttggttggtgactg |
637 |
Q |
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| T |
50648149 |
ccttgtcgttttcaatttactggagctgctgcggatcgaacgcgacagagggttgaaatgggtaccgagaaggaggttgttggttggtgactg |
50648241 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 84; Significance: 1e-39; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 481 - 633
Target Start/End: Original strand, 31532087 - 31532245
Alignment:
| Q |
481 |
aggaaaaccttatcgttgacaaattgatgaactgttaagctaaaaccaagacatgaactgttaaccttgtcgttttcaatttactggagctgctgcggat |
580 |
Q |
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| T |
31532087 |
aggaaaacattatcgttgacaaattgttgaactgttaagctaaaaccgaggtatgaactattaacgttatcgttttcaatttactggagctgttgcggat |
31532186 |
T |
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| Q |
581 |
ggaacgcgacagagggttgaaatgggtaccg------agaaggaggttgttggttggtg |
633 |
Q |
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| T |
31532187 |
cgatcacgacggagggttgaaatgggtaccgagaataagaaggaggttgttggttggtg |
31532245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 192 - 301
Target Start/End: Original strand, 31531836 - 31531952
Alignment:
| Q |
192 |
ggatgggcaaagttcagtttagac-caaaactgtgtctgaac-----cgaactgaactgtttttcaattcgtttgaactgaacc-aaactataatggaac |
284 |
Q |
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| T |
31531836 |
ggatgggcaaagttcaatttagactcaaaattgtgtctgaaccgaaccgaactgaactgtttttcagttcgtttgaactgaaccaaaaccataatggaac |
31531935 |
T |
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| Q |
285 |
aattcgaactgaaccaa |
301 |
Q |
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| T |
31531936 |
aattcgaactgaaccaa |
31531952 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 324 - 380
Target Start/End: Original strand, 31531954 - 31532008
Alignment:
| Q |
324 |
ttaatatgaattacagcaccaacatatcgttttcaatttactggttctgcatatatg |
380 |
Q |
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| T |
31531954 |
ttaatatgaatcacagtaccaacat--cgtcttcaatttaatggttctgcatatatg |
31532008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 192 - 247
Target Start/End: Original strand, 11155016 - 11155072
Alignment:
| Q |
192 |
ggatgggcaaagttcagtttaga-ccaaaactgtgtctgaaccgaactgaactgttt |
247 |
Q |
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| T |
11155016 |
ggatgggcaaagttcagttcacatccaaaactgtgtttgaactgaaccgaactgttt |
11155072 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 192 - 242
Target Start/End: Original strand, 52421785 - 52421835
Alignment:
| Q |
192 |
ggatgggcaaagttcagtttagaccaaaactgtgtctgaaccgaactgaac |
242 |
Q |
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| T |
52421785 |
ggatgggcaaagttcagtttagaccaaaactgtgtcaaaactgaactgaac |
52421835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 192 - 227
Target Start/End: Original strand, 42851519 - 42851554
Alignment:
| Q |
192 |
ggatgggcaaagttcagtttagaccaaaactgtgtc |
227 |
Q |
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| T |
42851519 |
ggatgggcaaagttcagtttagaccaagactgtgtc |
42851554 |
T |
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