View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17639_high_31 (Length: 302)
Name: NF17639_high_31
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17639_high_31 |
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| [»] chr4 (2 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 261; Significance: 1e-145; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 30 - 302
Target Start/End: Original strand, 34687025 - 34687297
Alignment:
| Q |
30 |
ctctgatttcccgaatatgatcgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgatgacatcatgaacaatgaaaatgaaaatgga |
129 |
Q |
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| T |
34687025 |
ctctgatttcccgaatatgattgaaccctcacctcaacaaaatgttgatctgcctctgctgaattatgataacatcatgaacaatgaaaatgaaaatgga |
34687124 |
T |
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| Q |
130 |
atctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtg |
229 |
Q |
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| T |
34687125 |
atctactcagtccatgatcttttttatcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtg |
34687224 |
T |
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| Q |
230 |
tcacgacaacttcaagtaatgatgattcaactgattttgctcctctacctccggccattgacatgagtgcacc |
302 |
Q |
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| T |
34687225 |
tcacgacaacttcaagtaatgatgattcaactgatcttgctcctctacctccggccattgacatgagtgcacc |
34687297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 60 - 302
Target Start/End: Original strand, 34694981 - 34695226
Alignment:
| Q |
60 |
acctcaacaaaatgttgatctgcctctgctgaattatgatgacatcatgaacaatgaaaatgaaaatggaatctactcagtccatgatcttttttatcaa |
159 |
Q |
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| T |
34694981 |
acctcaagaaaatgttgatctgcctctacttaattatgataacatcatgaactatggaaacaaaaatggaatctgctcaatcaatgacctttttgatcaa |
34695080 |
T |
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| Q |
160 |
gagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatg---att |
256 |
Q |
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| T |
34695081 |
gagaatattcaagaggagtcgattcatatgatgcatatgcatcaacaagacccacaacttaattttggtgtcacgacagcttcaagtaatgatgatcatt |
34695180 |
T |
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| Q |
257 |
caactgattttgctcctctacctccggccattgacatgagtgcacc |
302 |
Q |
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| T |
34695181 |
caactgatcttgctcctctccctccggccattgacatgagtgcacc |
34695226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 57; Significance: 8e-24; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 57; E-Value: 8e-24
Query Start/End: Original strand, 155 - 255
Target Start/End: Original strand, 8285050 - 8285150
Alignment:
| Q |
155 |
atcaagagaatattcaagaggaagcgatgaatatgatgcacatgcaccaacaagacccacaatttaattttggtgtcacgacaacttcaagtaatgatga |
254 |
Q |
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| T |
8285050 |
atcaagagaagattcaagaggaagcaatgaatatgattcacatgtaccagcaagacccacaacttaattttggtgttgctacaacatcaagcaatgatga |
8285149 |
T |
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| Q |
255 |
t |
255 |
Q |
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| T |
8285150 |
t |
8285150 |
T |
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