View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF17639_high_4 (Length: 413)

Name: NF17639_high_4
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF17639_high_4
NF17639_high_4
[»] chr3 (4 HSPs)
chr3 (44-126)||(28537939-28538021)
chr3 (228-369)||(28538122-28538263)
chr3 (345-383)||(4638172-4638210)
chr3 (325-377)||(7648764-7648816)
[»] chr5 (4 HSPs)
chr5 (312-377)||(7616945-7617010)
chr5 (328-394)||(35638066-35638132)
chr5 (327-402)||(39728387-39728462)
chr5 (294-402)||(21149734-21149842)
[»] scaffold0045 (1 HSPs)
scaffold0045 (326-402)||(58064-58140)
[»] chr6 (3 HSPs)
chr6 (330-379)||(11142629-11142678)
chr6 (328-379)||(8888908-8888959)
chr6 (314-383)||(14107377-14107446)
[»] chr4 (1 HSPs)
chr4 (290-377)||(37369037-37369124)
[»] chr1 (1 HSPs)
chr1 (340-383)||(10507717-10507760)
[»] chr8 (3 HSPs)
chr8 (325-378)||(18091427-18091480)
chr8 (325-377)||(583840-583892)
chr8 (325-369)||(33401829-33401873)
[»] chr2 (2 HSPs)
chr2 (294-383)||(26805314-26805403)
chr2 (325-393)||(41187717-41187785)
[»] scaffold0209 (1 HSPs)
scaffold0209 (325-377)||(12600-12652)


Alignment Details
Target: chr3 (Bit Score: 83; Significance: 3e-39; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 28537939 - 28538021
Alignment:
Q  44 tagaaactttatgtgaaatggttaagaacagagaaaatcaacactgacccagtaatgtaatgagggtgaaaatcacatatatc 126  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28537939 tagaaactttatgtgaaatggttaagaacagagaaaatcaacactgacccagtaatgtaatgagggtgaaaatcacatatatc 28538021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 228 - 369
Target Start/End: Original strand, 28538122 - 28538263
Alignment:
Q  228 tggggggttaacggtgacggagtttatttttgtgccgttagtttatagnnnnnnnnnnnnngttgacttttgcatcggttttcaatccactaataacggg 327  Q
    ||||||||||||||||||||||||| ||||||||||||||||||||||              ||  |||||||| |||||||||||||||||||||||||    
T  28538122 tggggggttaacggtgacggagtttttttttgtgccgttagtttatagtttttttttttttcttttcttttgcaccggttttcaatccactaataacggg 28538221  T
Q  328 cgactaatttgactcaagcgtagaggtatgcacactggtcaa 369  Q
    ||||||||| |||||| ||||||||  ||||||||| |||||    
T  28538222 cgactaattcgactcatgcgtagagacatgcacactagtcaa 28538263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 345 - 383
Target Start/End: Complemental strand, 4638210 - 4638172
Alignment:
Q  345 gcgtagaggtatgcacactggtcaaacgttgtttctcct 383  Q
    |||||||||||||| |||||||||| |||||||||||||    
T  4638210 gcgtagaggtatgcgcactggtcaagcgttgtttctcct 4638172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 7648816 - 7648764
Alignment:
Q  325 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 377  Q
    |||||||||||  | |||  |||||||||||||| ||||||||||||||||||    
T  7648816 gggcgactaatccggctcgtgcgtagaggtatgcgcactggtcaaacgttgtt 7648764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 312 - 377
Target Start/End: Complemental strand, 7617010 - 7616945
Alignment:
Q  312 atccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 377  Q
    |||||| ||||| || |||||||| ||||||| ||||||||| ||||| |||||||||||||||||    
T  7617010 atccaccaataatggacgactaatctgactcatgcgtagaggcatgcatactggtcaaacgttgtt 7616945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 328 - 394
Target Start/End: Original strand, 35638066 - 35638132
Alignment:
Q  328 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaat 394  Q
    |||||||| ||||||  ||||||||||||||||||||  ||||||||||| ||||| | ||||||||    
T  35638066 cgactaatctgactcgtgcgtagaggtatgcacactgaccaaacgttgttcctcctgaaaatcgaat 35638132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 327 - 402
Target Start/End: Complemental strand, 39728462 - 39728387
Alignment:
Q  327 gcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 402  Q
    |||||||||| ||||| |||||||||| ||||||||||| |||  ||||||||  || ||||||||| || |||||    
T  39728462 gcgactaattcgactcgagcgtagaggcatgcacactggccaagtgttgtttcctctgataatcgaacctggtatt 39728387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 294 - 402
Target Start/End: Complemental strand, 21149842 - 21149734
Alignment:
Q  294 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 393  Q
    |||| |||||||||||| |||||| |||   |||||||||||   ||||  ||||||||  |||| |||||||||||||||||| | ||| | |||||||    
T  21149842 ctttcgcatcggttttctatccaccaatggtgggcgactaatccaactcgtgcgtagagtcatgcgcactggtcaaacgttgttccccctgaaaatcgaa 21149743  T
Q  394 tctagtatt 402  Q
     || |||||    
T  21149742 cctggtatt 21149734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0045 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: scaffold0045
Description:

Target: scaffold0045; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 326 - 402
Target Start/End: Original strand, 58064 - 58140
Alignment:
Q  326 ggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaatctagtatt 402  Q
    ||||||||||   ||||| |||||||||||| ||||||||||||||||||||||| ||   |||| |||||||||||    
T  58064 ggcgactaatccaactcatgcgtagaggtatacacactggtcaaacgttgtttcttctaggaatcaaatctagtatt 58140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 330 - 379
Target Start/End: Complemental strand, 11142678 - 11142629
Alignment:
Q  330 actaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 379  Q
    |||||| ||||||| ||||||||| |||| ||||||||||||||||||||    
T  11142678 actaatctgactcatgcgtagaggcatgcgcactggtcaaacgttgtttc 11142629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 328 - 379
Target Start/End: Complemental strand, 8888959 - 8888908
Alignment:
Q  328 cgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttc 379  Q
    ||||||||  |||||| |||||||||||||| |||||| |||||||||||||    
T  8888959 cgactaatccgactcatgcgtagaggtatgcgcactggccaaacgttgtttc 8888908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 314 - 383
Target Start/End: Original strand, 14107377 - 14107446
Alignment:
Q  314 ccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 383  Q
    |||||||||| |||||||||||  | |||| ||||||||| |||  |||||||||| ||||||| |||||    
T  14107377 ccactaataatgggcgactaatccggctcatgcgtagaggcatgtgcactggtcaagcgttgttcctcct 14107446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 290 - 377
Target Start/End: Original strand, 37369037 - 37369124
Alignment:
Q  290 ttgacttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 377  Q
    |||||||| |||||||||| | || ||| ||||  |||||||| ||  |||||  ||||||||| ||||||||||| |||||||||||    
T  37369037 ttgactttcgcatcggtttccgattcaccaatagtgggcgacttatccgactcgtgcgtagaggcatgcacactggacaaacgttgtt 37369124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 340 - 383
Target Start/End: Complemental strand, 10507760 - 10507717
Alignment:
Q  340 ctcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 383  Q
    |||| ||||||||||||||||||||| ||||||||||| |||||    
T  10507760 ctcatgcgtagaggtatgcacactggccaaacgttgttcctcct 10507717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 18091480 - 18091427
Alignment:
Q  325 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgttt 378  Q
    |||||||||||| | |||  ||||||||| |||| |||||||||||||||||||    
T  18091480 gggcgactaattcgcctcgtgcgtagaggcatgcgcactggtcaaacgttgttt 18091427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 583892 - 583840
Alignment:
Q  325 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 377  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  583892 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 583840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 369
Target Start/End: Original strand, 33401829 - 33401873
Alignment:
Q  325 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaa 369  Q
    |||||||||||  |||||| ||||||||| |||||||||||||||    
T  33401829 gggcgactaatccgactcatgcgtagaggcatgcacactggtcaa 33401873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 294 - 383
Target Start/End: Complemental strand, 26805403 - 26805314
Alignment:
Q  294 cttttgcatcggttttcaatccactaataacgggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctcct 383  Q
    ||||||||||||||||| | |||| ||    |||||||||||  |||||| ||||||||| |||  |||||| ||||||| |||||||||    
T  26805403 cttttgcatcggttttcgagccaccaaaggtgggcgactaatccgactcatgcgtagaggcatgtgcactggccaaacgtcgtttctcct 26805314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 393
Target Start/End: Complemental strand, 41187785 - 41187717
Alignment:
Q  325 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtttctccttataatcgaa 393  Q
    ||||||||||| || |||| ||||||||| ||| |||||||||||  |||||| | ||| |||||||||    
T  41187785 gggcgactaatatgtctcatgcgtagaggcatggacactggtcaagtgttgttccccctcataatcgaa 41187717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0209 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0209
Description:

Target: scaffold0209; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 325 - 377
Target Start/End: Complemental strand, 12652 - 12600
Alignment:
Q  325 gggcgactaatttgactcaagcgtagaggtatgcacactggtcaaacgttgtt 377  Q
    |||||||||||  |||||| ||||||||| |||| |||||||||| |||||||    
T  12652 gggcgactaatccgactcatgcgtagaggcatgcgcactggtcaagcgttgtt 12600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University