View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17639_high_6 (Length: 395)
Name: NF17639_high_6
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17639_high_6 |
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Alignment Details
Target: chr3 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 1 - 368
Target Start/End: Complemental strand, 32062871 - 32062504
Alignment:
| Q |
1 |
tcatgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggacgttg |
100 |
Q |
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| T |
32062871 |
tcatgttaatgtcatccatggcttcctttgtgtggagagttggctcaaataaatctgattcctttgactttcctcgcgattttggtagtggaggacgttg |
32062772 |
T |
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| Q |
101 |
tttctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatcnnnnnnnc |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
32062771 |
tttctgctcgaggtcatcatccgcaagtatcgaaaacccactgagttcctttccactgttgttccccggtgctttctcctgcttcattaatctttttttc |
32062672 |
T |
|
| Q |
201 |
cgaacaaaatctattggcttacctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttct |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062671 |
cgaacaaaatctattggcttacctccttgtttctgtttgaggtcatcatcatcatcggcaaggattgaaaacccaccgaattcctttccactattgttct |
32062572 |
T |
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| Q |
301 |
ccagtgcattctcttgcttcaatgaccttttctttctaacaaagtctattggcttcccaaacatgttg |
368 |
Q |
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|| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32062571 |
ccggtgcattctcttgcttcagtgaccttttctttctaacaaagtctattggcttcccaaacatgttg |
32062504 |
T |
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