View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF17639_low_1 (Length: 344)
Name: NF17639_low_1
Description: NF17639
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF17639_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 253; Significance: 1e-140; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 84 - 336
Target Start/End: Original strand, 29691097 - 29691349
Alignment:
| Q |
84 |
tctttgtttactagctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaa |
183 |
Q |
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| T |
29691097 |
tctttgtttactagctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaa |
29691196 |
T |
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| Q |
184 |
gagaagggacagaaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcaccagttcaaattccaatgactcatattagaatttctcctatt |
283 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29691197 |
gagaagggacagaaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcaccagttcaaattccaatgactcatattagaatttctcctatt |
29691296 |
T |
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| Q |
284 |
gaaatttgtttctttcaactaattaacgaaatcataatggcgttaagtaacaa |
336 |
Q |
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| T |
29691297 |
gaaatttgtttctttcaactaattaacgaaatcataatggcgttaagtaacaa |
29691349 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 86 - 267
Target Start/End: Original strand, 29719791 - 29719973
Alignment:
| Q |
86 |
tttgtttactagctagggtttatgatctgagatttgaaggaatgaccttgttgttagggttttaatttagtcaaaaatattgtttgaaagtaaaagaaga |
185 |
Q |
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|||||| |||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
29719791 |
tttgttcactagctagggtttgtgatctgagattgaaaggaatgaccttgttcttagggttttaatttagtcaaaaaaattgtttgaaagtaaaagaaga |
29719890 |
T |
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| Q |
186 |
gaagggacagaaagattaggtactttgttgtcttgtgatgagtgggtcatgtttcacc-agttcaaattccaatgactcatat |
267 |
Q |
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| T |
29719891 |
gaagggacagaaaggttaggtactttgttgtcttgtgatgagtgggtcatgtttcacctagttcaaatcccaatgacacatat |
29719973 |
T |
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