View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_100 (Length: 229)

Name: NF1763_high_100
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_100
NF1763_high_100
[»] chr6 (3 HSPs)
chr6 (1-229)||(30948222-30948449)
chr6 (1-93)||(16720982-16721069)
chr6 (1-92)||(14010891-14010977)
[»] chr5 (3 HSPs)
chr5 (1-206)||(14378671-14378871)
chr5 (1-74)||(19613257-19613325)
chr5 (153-206)||(40088621-40088674)
[»] chr4 (2 HSPs)
chr4 (1-93)||(54187192-54187279)
chr4 (46-93)||(8571888-8571935)
[»] chr7 (1 HSPs)
chr7 (46-93)||(3366319-3366366)
[»] chr3 (1 HSPs)
chr3 (46-93)||(28697848-28697895)
[»] chr2 (1 HSPs)
chr2 (1-92)||(45403892-45403978)
[»] chr1 (1 HSPs)
chr1 (149-206)||(25467086-25467143)


Alignment Details
Target: chr6 (Bit Score: 133; Significance: 3e-69; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 30948449 - 30948222
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttatagagnnnnnnn 100  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||           
T  30948449 atggatttggtgcgaaccaatccttaatggtggtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttatagagaaaaaat 30948350  T
Q  101 nnnnnnnnntttctcttatttgaacgctgtaannnnnnnnncctcccaaatattcttaaaatcaactcaattagtcaagaactgaacaagcaataatacc 200  Q
             |||| |||||||||| |||||||         |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30948349 gttaaaaaatttcacttatttgaatgctgtaatttttttt-cctcccaaatattcttaaaatcaactcaattagtcaagaactgaacaagcaataatacc 30948251  T
Q  201 ttatcataaactaactttgagtcttctcc 229  Q
    |||||||||||||||||||||||||||||    
T  30948250 ttatcataaactaactttgagtcttctcc 30948222  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Complemental strand, 16721069 - 16720982
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttatagag 93  Q
    ||||||||||||| ||| ||||||||| ||  |||||||||||||     |||||||||||||||||||||||||||| ||||||||||||||    
T  16721069 atggatttggtgcaaacaaatccttaatggcggtctggcttaaaa-----agcagaaatctagattcatgaacaacttgtttcacttatagag 16720982  T

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Target: chr6; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 92
Target Start/End: Original strand, 14010891 - 14010977
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttataga 92  Q
    ||||||||||||| ||| ||||||||| ||  ||||||||||||     ||||||||||||||||||||||||||||| |||||||||||||    
T  14010891 atggatttggtgcaaacaaatccttaatggcggtctggcttaaa-----aagcagaaatctagattcatgaacaacttgtttcacttataga 14010977  T

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Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 206
Target Start/End: Complemental strand, 14378871 - 14378671
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttatagagnnnnnnn 100  Q
    ||||||||||||||||||||||||||| ||| ||||| ||     |||||||||||||||||||||||||||||| || ||||||||||||||           
T  14378871 atggatttggtgcgaaccaatccttaatggtggtctgact-----taaaaagcagaaatctagattcatgaacaatttgtttcacttatagagaaaaaat 14378777  T
Q  101 nnnnnnnnntttctcttatttgaacgctgtaannnnnnnnncctcccaaatattcttaaaatcaactcaattagtcaagaactgaacaagcaataatacc 200  Q
              ||| |||||||||| |||||||          |||||||||||||||||||||||||||| |||| ||||| |||| |||||||||||||    
T  14378776 gttaaaaaaattcacttatttgaatgctgtaaaaaaaagattctcccaaatattcttaaaatcaactcaactagtaaagaagtgaataagcaataatacc 14378677  T
Q  201 ttatca 206  Q
    ||||||    
T  14378676 ttatca 14378671  T

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Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 74
Target Start/End: Complemental strand, 19613325 - 19613257
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaaca 74  Q
    ||||||||||||| ||| ||||||||| ||  |||||||||||||     ||||||||||||||||||||||||    
T  19613325 atggatttggtgcaaacaaatccttaatggcggtctggcttaaaa-----agcagaaatctagattcatgaaca 19613257  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 153 - 206
Target Start/End: Original strand, 40088621 - 40088674
Alignment:
Q  153 ttcttaaaatcaactcaattagtcaagaactgaacaagcaataataccttatca 206  Q
    |||||||||||||||||| |||| ||||| |||| |||||||||||||| ||||    
T  40088621 ttcttaaaatcaactcaactagtgaagaagtgaataagcaataatacctgatca 40088674  T

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Target: chr4 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 1 - 93
Target Start/End: Original strand, 54187192 - 54187279
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttatagag 93  Q
    ||||||||||||| ||| ||||||||| ||  ||||||||||||     ||||||||||||||||||||||||||||| ||||||||||||||    
T  54187192 atggatttggtgcaaacaaatccttaatggcggtctggcttaaa-----aagcagaaatctagattcatgaacaacttgtttcacttatagag 54187279  T

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Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 8571935 - 8571888
Alignment:
Q  46 taaaaagcagaaatctagattcatgaacaacttatttcacttatagag 93  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  8571935 taaaaagcagaaatctagattcatgaacaacttgtttcacttatagag 8571888  T

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Target: chr7 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 93
Target Start/End: Original strand, 3366319 - 3366366
Alignment:
Q  46 taaaaagcagaaatctagattcatgaacaacttatttcacttatagag 93  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  3366319 taaaaagcagaaatctagattcatgaacaacttgtttcacttatagag 3366366  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 46 - 93
Target Start/End: Complemental strand, 28697895 - 28697848
Alignment:
Q  46 taaaaagcagaaatctagattcatgaacaacttatttcacttatagag 93  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||    
T  28697895 taaaaagcagaaatctagattcatgaacaacttgtttcacttatagag 28697848  T

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Target: chr2 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 92
Target Start/End: Complemental strand, 45403978 - 45403892
Alignment:
Q  1 atggatttggtgcgaaccaatccttaagggttgtctggcttaaaataaaaagcagaaatctagattcatgaacaacttatttcacttataga 92  Q
    ||||||||||||| ||| ||||||||| ||  |||||||||||||     |||||||||||||||||||||||| ||| |||||||||||||    
T  45403978 atggatttggtgcaaacaaatccttaatggcggtctggcttaaaa-----agcagaaatctagattcatgaacagcttgtttcacttataga 45403892  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 149 - 206
Target Start/End: Original strand, 25467086 - 25467143
Alignment:
Q  149 aatattcttaaaatcaactcaattagtcaagaactgaacaagcaataataccttatca 206  Q
    |||||||||||||||||||||| |||||||||| |||| |||||||||||||| ||||    
T  25467086 aatattcttaaaatcaactcaactagtcaagaagtgaataagcaataatacctgatca 25467143  T

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