View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_103 (Length: 226)
Name: NF1763_high_103
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_103 |
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| [»] chr6 (2 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 158; Significance: 3e-84; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 226
Target Start/End: Complemental strand, 30904494 - 30904267
Alignment:
| Q |
2 |
tgcatatatatttcattcaaaaatatggtttgtaagtcattgttgagccaataatcaccaactaagatatctacaatatgctggaattatttatacatga |
101 |
Q |
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| T |
30904494 |
tgcatgtatatttcattcatggatatagtttgtaggtcattgttgtgccaataatcaccaattaatatatctacaatatgctgaaactatttatacatga |
30904395 |
T |
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| Q |
102 |
tatcaa---atgctaatatattaaaggtttggaaatggatgatccattttacatgattttatcttatttaaatttgtttagtaaaaattaaaattctaac |
198 |
Q |
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| T |
30904394 |
tatcaagtgatgccaatatattaaaggtttggaaatggatgatccattttacatgattttatcttatatacatttgtttagtaaaaattaaaattctaac |
30904295 |
T |
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| Q |
199 |
ttaaatgtgtatctcacttattagcatc |
226 |
Q |
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| T |
30904294 |
ttaaatgtgtatctcacttattagcatc |
30904267 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 113 - 226
Target Start/End: Complemental strand, 30897415 - 30897308
Alignment:
| Q |
113 |
aatatattaaaggtttggaaatggatgatccattttacatgattttatcttatttaaatttgtttagtaaaaattaaaattctaacttaaatgtgtatct |
212 |
Q |
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||||||||||||||||||||||| ||| | |||||| ||||||| ||||||||| ||||||| | ||| |||| || ||||||||| ||||||| |
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| T |
30897415 |
aatatattaaaggtttggaaatgaatgctatattttatatgatttaatcttattttcatttgtt--gaaaa----aaaaatcaaacttaaatttgtatct |
30897322 |
T |
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| Q |
213 |
cacttattagcatc |
226 |
Q |
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| T |
30897321 |
cacttattagcatc |
30897308 |
T |
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