View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_104 (Length: 225)
Name: NF1763_high_104
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_104 |
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Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 8 - 212
Target Start/End: Complemental strand, 30948756 - 30948552
Alignment:
| Q |
8 |
aaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctggagccattttttcacatgaaccagcagtatcaaagtca |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30948756 |
aaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctggagccattttttcacatgaaccagcagtatcaaagtca |
30948657 |
T |
|
| Q |
108 |
cattgataaaattcagggtatcttcctttagatggattgtcccgtctaaacactttcgctatttggtacctttttaaagatatcagaccattcatagcta |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
30948656 |
cattgataaaattcagggtatcttcctttaaatggattgtcccgtctaaacactttcgctatttggtacctttttaaagatatcagaccattcatagcta |
30948557 |
T |
|
| Q |
208 |
caaat |
212 |
Q |
| |
|
||||| |
|
|
| T |
30948556 |
caaat |
30948552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 132; Significance: 1e-68; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 9 - 212
Target Start/End: Original strand, 54186886 - 54187089
Alignment:
| Q |
9 |
aaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctggagccattttttcacatgaaccagcagtatcaaagtcac |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||||||||||| |||||||| ||| |
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|
| T |
54186886 |
aaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcaaaatctggagccatttttttagatgaaccagcaatatcaaagccac |
54186985 |
T |
|
| Q |
109 |
attgataaaattcagggtatcttcctttagatggattgtcccgtctaaacactttcgctatttggtacctttttaaagatatcagaccattcatagctac |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| || | ||| | |||| |||||| ||||||||||||||||| ||||||||| |||| || | |
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|
| T |
54186986 |
attgataaaattcagggtatcttcctttagatggattttctcttctgtaggctttagctattaggtacctttttaaagatgtcagaccatccatatctgc |
54187085 |
T |
|
| Q |
209 |
aaat |
212 |
Q |
| |
|
|||| |
|
|
| T |
54187086 |
aaat |
54187089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 8572012 - 8571954
Alignment:
| Q |
9 |
aaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatc |
67 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
8572012 |
aaatcaccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcaaaatc |
8571954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 120; Significance: 1e-61; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 120; E-Value: 1e-61
Query Start/End: Original strand, 8 - 211
Target Start/End: Original strand, 25466621 - 25466824
Alignment:
| Q |
8 |
aaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctggagccattttttcacatgaaccagcagtatcaaagtca |
107 |
Q |
| |
|
|||||||||||||||||||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| || ||||||| ||||||||||| |
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|
| T |
25466621 |
aaaatccccaatgttcagctcatcaagcaattcagtcaaaattctaacaacctcaaaatctggagccattttttcagctggaccagcaatatcaaagtca |
25466720 |
T |
|
| Q |
108 |
cattgataaaattcagggtatcttcctttagatggattgtcccgtctaaacactttcgctatttggtacctttttaaagatatcagaccattcatagcta |
207 |
Q |
| |
|
||||||||||||||| |||||||||| |||||||| ||||||| ||| | ||||| ||||||||||| ||||| |||||| ||||||||||||| || | |
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|
| T |
25466721 |
cattgataaaattcacggtatcttcccttagatgggttgtcccttctgtagactttagctatttggtatcttttcaaagatgtcagaccattcatggcca |
25466820 |
T |
|
| Q |
208 |
caaa |
211 |
Q |
| |
|
|||| |
|
|
| T |
25466821 |
caaa |
25466824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 25477043 - 25477185
Alignment:
| Q |
8 |
aaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctggagccattttttcacatgaaccagcagtatcaaagtca |
107 |
Q |
| |
|
|||||||||||| ||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| || || ||||||||||| ||||||||||| |
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|
| T |
25477043 |
aaaatccccaattttcagctcatcaagcaattaagtcaaaattctaacaacctcaaaatctggagccattgttgcagatgaaccagcaatatcaaagtca |
25477142 |
T |
|
| Q |
108 |
cattgataaaattcagggtatcttcctttagatggattgtccc |
150 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||| ||||||| |
|
|
| T |
25477143 |
cattgataaaattcacggtatcttcctttagatgggttgtccc |
25477185 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 36 - 211
Target Start/End: Complemental strand, 39831916 - 39831737
Alignment:
| Q |
36 |
aattaagtcaaaattctaacaacctcgaaatctgga---gcc-attttttcacatgaaccagcagtatcaaagtcacattgataaaattcagggtatctt |
131 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||| || |||||| | ||||||| ||| |||||||||||||||||||||||||| ||| |||| |
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|
| T |
39831916 |
aattaagtcaaaattctaacaacctcaaaatctggatgagctgatttttgctgatgaacctgcaatatcaaagtcacattgataaaattcacggtgtctt |
39831817 |
T |
|
| Q |
132 |
cctttagatggattgtcccgtctaaacactttcgctatttggtacctttttaaagatatcagaccattcatagctacaaa |
211 |
Q |
| |
|
||||||||||| ||||| | || | || || |||||||| |||||||| |||||| ||||||||||||| || ||||| |
|
|
| T |
39831816 |
cctttagatggtttgtcgcttccgtagaccttagctatttgataccttttcaaagatgtcagaccattcattgccacaaa |
39831737 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 103; Significance: 2e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 8 - 150
Target Start/End: Original strand, 40088429 - 40088571
Alignment:
| Q |
8 |
aaaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatctggagccattttttcacatgaaccagcagtatcaaagtca |
107 |
Q |
| |
|
||||||||||||||| |||||||||| |||| ||||||||||||||||||||| ||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
40088429 |
aaaatccccaatgttgagctcatcaagcaattcagtcaaaattctaacaacctcaaaatctggagccattttttcatatgaaccagcaatatcaaagtca |
40088528 |
T |
|
| Q |
108 |
cattgataaaattcagggtatcttcctttagatggattgtccc |
150 |
Q |
| |
|
||||||||||||||| |||||||||||||||| || ||||||| |
|
|
| T |
40088529 |
cattgataaaattcacggtatcttcctttagacgggttgtccc |
40088571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 106 - 212
Target Start/End: Complemental strand, 14379079 - 14378974
Alignment:
| Q |
106 |
cacattgataaaattcagggtatcttcctttagatggattgtcccgtctaaacactttcgctatttggtacctttttaaagatatcagaccattcatagc |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| | ||| | || || |||||||||||||||||||||||| ||||||||| |||||| |
|
|
| T |
14379079 |
cacattgataaaattcagggtatcttcctttagatggattgtcacttctgtagac-ttagctatttggtacctttttaaagatgtcagaccatccatagc |
14378981 |
T |
|
| Q |
206 |
tacaaat |
212 |
Q |
| |
|
| ||||| |
|
|
| T |
14378980 |
tgcaaat |
14378974 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 9 - 67
Target Start/End: Complemental strand, 28697972 - 28697914
Alignment:
| Q |
9 |
aaatccccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcgaaatc |
67 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28697972 |
aaatcaccaatgttcagctcatcaactaattaagtcaaaattctaacaacctcaaaatc |
28697914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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