View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_110 (Length: 218)
Name: NF1763_high_110
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_110 |
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Alignment Details
Target: chr5 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 18 - 199
Target Start/End: Complemental strand, 2587513 - 2587332
Alignment:
| Q |
18 |
agaagatcgacgagtgagtggtgacatagagaggaaatgggcatgtatgatgcttagatatatcaatgtggtagcactgattgacattaaggcgggaatg |
117 |
Q |
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| T |
2587513 |
agaagatcgacgagtgagtggtgacatagagaggaaatgggcatgtatgatgcttagatatatcaatgtggtagcacttattgacattaaggcgggaatg |
2587414 |
T |
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| Q |
118 |
ttaattgtcacgtgtcacagttgaattaaccaatatcatgtataatattatatcattgaagtgcaatctatatcaatgtcta |
199 |
Q |
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| T |
2587413 |
ttaattgtcacgtatcacagttgaattaaccaatatcatgtataatattatgtcactgaagtgcaatctatatcaatgtcta |
2587332 |
T |
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