View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_111 (Length: 217)

Name: NF1763_high_111
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_111
NF1763_high_111
[»] chr5 (7 HSPs)
chr5 (11-217)||(39857576-39857782)
chr5 (15-214)||(39847746-39847944)
chr5 (18-204)||(39911132-39911319)
chr5 (18-216)||(39864767-39864975)
chr5 (25-171)||(37466212-37466359)
chr5 (18-129)||(39735942-39736054)
chr5 (15-127)||(39898450-39898565)


Alignment Details
Target: chr5 (Bit Score: 191; Significance: 1e-104; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 11 - 217
Target Start/End: Complemental strand, 39857782 - 39857576
Alignment:
Q  11 atgagctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttttgacaaactacattattatatagga 110  Q
    |||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  39857782 atgagctggtgacgtttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttttgacaaacttcattattatatagga 39857683  T
Q  111 tttatgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactgaatcatt 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39857682 tttatgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactggatcatt 39857583  T
Q  211 tcttgtt 217  Q
    |||||||    
T  39857582 tcttgtt 39857576  T

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Target: chr5; HSP #2
Raw Score: 144; E-Value: 7e-76
Query Start/End: Original strand, 15 - 214
Target Start/End: Complemental strand, 39847944 - 39847746
Alignment:
Q  15 gctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttttgacaaactacattattatataggattta 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||    
T  39847944 gctggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagtcctttt-gacaaacttcattattatataggattta 39847846  T
Q  115 tgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactgaatcatttctt 214  Q
    || ||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |  ||||||||||  || ||||| |||||||||| |||||||    
T  39847845 tgtcccattgcaccaccctatatcggagaggatgatatattacttttcttcaagttatatgatcctgaaagagaggagctacggtactgaataatttctt 39847746  T

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Target: chr5; HSP #3
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 18 - 204
Target Start/End: Complemental strand, 39911319 - 39911132
Alignment:
Q  18 ggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaaaca--gtcctttttgacaaactacattattatataggatttat 115  Q
    |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||| ||  ||||| || |||||||||||||||||| |||||||||     
T  39911319 ggtaacgtttatattatgaatttgtatactattttgatagcatgaaacatcattcaagcatagtcctgtt-gacaaactacattattatttaggatttac 39911221  T
Q  116 gccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactga 204  Q
    ||||||||||||||||| | ||  || ||||||||||||||||||| ||||||||| |  |||||||||| | | ||||| ||||||||    
T  39911220 gccccattgcaccactcaagaagagaaaggatgatatattactttttttcaagttatatgatcctgaaagaatggagctacggtactga 39911132  T

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Target: chr5; HSP #4
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 18 - 216
Target Start/End: Complemental strand, 39864975 - 39864767
Alignment:
Q  18 ggtaacatttatattatgaagttgtatactat--tttgatagcatgaaacatcattcaa--acagtccttt------ttgacaaactacattattatata 107  Q
    ||||||||||||||||||||||||||||||||  |||||||||| |||||| |||||||  | | |||| |      |||||||||| ||||||||||||    
T  39864975 ggtaacatttatattatgaagttgtatactatattttgatagcacgaaacaccattcaagtaaaatcctatatatgattgacaaactgcattattatata 39864876  T
Q  108 ggatttatgccccattgcaccactctataacggagaggatgatatattacttttcttcaagttacacaatcctgaaaggaagaagctaaggtactgaatc 207  Q
    |||||| || ||||||| ||| ||| |||| | | |||||||||| |||||||| ||||||||| |  |||||||||   || ||||| ||||||||||     
T  39864875 ggatttgtgtcccattgaacctctccataaggtaaaggatgatatgttactttttttcaagttatatgatcctgaaaaagaggagctacggtactgaata 39864776  T
Q  208 atttcttgt 216  Q
    |||| ||||    
T  39864775 atttattgt 39864767  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 25 - 171
Target Start/End: Complemental strand, 37466359 - 37466212
Alignment:
Q  25 tttatattatgaagttgtatactattttgatagcatgaaacatcattcaaacagt-cctttttgacaaactacattattatataggatttatgccccatt 123  Q
    |||||||||||||| ||||||||||||| |||  ||||||||| || | ||||   || | |||||||||||| ||||| | ||||||||||| ||||||    
T  37466359 tttatattatgaagctgtatactatttttatataatgaaacattatccgaacacagccctgttgacaaactacgttattgtttaggatttatgtcccatt 37466260  T
Q  124 gcaccactctataacggagaggatgatatattacttttcttcaagtta 171  Q
    |||||||   | ||   | ||||||||||||||||||| |||||||||    
T  37466259 gcaccacctgagaagacaaaggatgatatattactttttttcaagtta 37466212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 18 - 129
Target Start/End: Original strand, 39735942 - 39736054
Alignment:
Q  18 ggtaacatttatattatgaagttgtatactattttgatagcatgaaacatcattcaa--acagtcctttttgacaaactacattattatataggatttat 115  Q
    ||||||||||| ||| ||||||||||| ||||||| ||   ||  ||||||||||||  | ||||| | |||||||||||| ||||||| |||||||||     
T  39735942 ggtaacatttaaattgtgaagttgtatgctattttaatgttatataacatcattcaagcatagtcc-tgttgacaaactacgttattatttaggatttac 39736040  T
Q  116 gccccattgcacca 129  Q
    ||||||| ||||||    
T  39736041 gccccatggcacca 39736054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 127
Target Start/End: Complemental strand, 39898565 - 39898450
Alignment:
Q  15 gctggtaacatttatattatgaagttgtatactattttgatagc--atgaaacatcattcaaac--agtcctttttgacaaactacattattatatagga 110  Q
    |||||||||||||  ||||||||||||||||||||||  |||||  || |||||||| |||| |  ||| | | |||||||| ||||||||||| |||||    
T  39898565 gctggtaacatttgcattatgaagttgtatactatttcaatagcatataaaacatcaatcaagcgtagt-catattgacaaagtacattattatttagga 39898467  T
Q  111 tttatgccccattgcac 127  Q
    |||| | ||||||||||    
T  39898466 tttacgtcccattgcac 39898450  T

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