View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_112 (Length: 214)
Name: NF1763_high_112
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_112 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 61 - 193
Target Start/End: Original strand, 1162254 - 1162386
Alignment:
| Q |
61 |
ttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaattccaagtgaa |
160 |
Q |
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| T |
1162254 |
ttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactttagtctactaattccaagtgaa |
1162353 |
T |
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| Q |
161 |
aagaagtaaaactagccatgtttgattgcaaga |
193 |
Q |
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| T |
1162354 |
aagaagtaaaactagccatgtttgattgcaaga |
1162386 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 3300323 - 3300186
Alignment:
| Q |
52 |
ttaatgcagttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaatt |
151 |
Q |
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| T |
3300323 |
ttaatgcagttttctgcataacagacttttacagcagtatggtgaaactgtaaatatcacacattaataca--gtttggtgccactctagtctactaatt |
3300226 |
T |
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| Q |
152 |
ccaagtgaaaagaagtaaaactagccatgtttgattgcaa |
191 |
Q |
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| T |
3300225 |
ccaagtgaaaagaagtaaaactagccatgtttgagtgcaa |
3300186 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 3393216 - 3393079
Alignment:
| Q |
52 |
ttaatgcagttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaatt |
151 |
Q |
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| T |
3393216 |
ttaatgcagttttctgcataacagacttttacagcagtatggtgaaactgtaaatatcacacattaataca--gtttggtgccactctagtctactaatt |
3393119 |
T |
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| Q |
152 |
ccaagtgaaaagaagtaaaactagccatgtttgattgcaa |
191 |
Q |
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| T |
3393118 |
ccaagtgaaaagaagtaaaactagccatgtttgagtgcaa |
3393079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 59 - 198
Target Start/End: Complemental strand, 40419810 - 40419672
Alignment:
| Q |
59 |
agttttctgcataacagacttttagagcagtatggtgaagctgtaaat----atcacacattaatacacagtttggtgccactctagtctactaattcca |
154 |
Q |
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| T |
40419810 |
agtttcctgcataacagactttcacagcagcatggtgaagctgtaaattaatatcacagattaataca--gtttgg--ccactctag-ctactaattcta |
40419716 |
T |
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| Q |
155 |
agtgaaaagaagtaaaactagccatgtttgattgcaagaattat |
198 |
Q |
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| T |
40419715 |
agtgaaaagaagtaaaactagccatatttgagtgcaagagttat |
40419672 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 39880795 - 39880665
Alignment:
| Q |
59 |
agttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaattccaagtg |
158 |
Q |
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| T |
39880795 |
agttttctgcata---gacttttacagaagcatggtgaagatgcaaatatcacactttaatatagc-ttgggtgccactctagtctactaattccaagtg |
39880700 |
T |
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| Q |
159 |
aaaagaagtaaaactagccatgtttgattgcaaga |
193 |
Q |
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| T |
39880699 |
aagagaagcgaaactagccatgtttgaatgcaaga |
39880665 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 59 - 193
Target Start/End: Complemental strand, 40412884 - 40412754
Alignment:
| Q |
59 |
agttttctgcataacagacttttagagcagtatggtgaagctgtaaatatcacacattaatacacagtttggtgccactctagtctactaattccaagtg |
158 |
Q |
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| T |
40412884 |
agttttctgcata---gacttttacagaagcatggtgaagatgcaaatatcacactttaatatagc-ttgggtgccactctagtctactaattccaagtg |
40412789 |
T |
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| Q |
159 |
aaaagaagtaaaactagccatgtttgattgcaaga |
193 |
Q |
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|| ||||| ||||||||||||||||| ||||||| |
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| T |
40412788 |
aagagaagcgaaactagccatgtttgaatgcaaga |
40412754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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