View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_16 (Length: 494)
Name: NF1763_high_16
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_16 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 219 - 487
Target Start/End: Original strand, 42091843 - 42092111
Alignment:
| Q |
219 |
attagtgttgcaaagtgggtattggggaagaggagcaatggatccagagccaggtcgttgccggagaacagacggtaaaaagtggcggtgtgcgagggat |
318 |
Q |
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| T |
42091843 |
attagtgttgcaaagtgggtattggggaagaggagcaatggatccagagccaggtcgttgccggagaacagacggtaaaaagtggcggtgtgcgagggat |
42091942 |
T |
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| Q |
319 |
gtggtggctggacaaaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaacttcccacaccaactagtaatggcagtg |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
42091943 |
gtggtggctggacaaaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaacttcccacaccaactagtaatggcggtg |
42092042 |
T |
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| Q |
419 |
gatctttctctgctttgccttctatttcttcacagcctcttgtcacttcctcattcaaatctccctttg |
487 |
Q |
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| T |
42092043 |
gatctttctctgctttgtcttctatttcttcacagcctcttgtcacttcctcattcaaatctccttttg |
42092111 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 19 - 163
Target Start/End: Original strand, 42091562 - 42091706
Alignment:
| Q |
19 |
atttaggtacatgttggttggtgcttctgttcctcctgaacttcttcaacctatcaagaaaagtcttcttcattcatctccttattttcttcatcattat |
118 |
Q |
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| T |
42091562 |
atttaggtacatgttggttggtgcttctgttcctcctgaacttcttcaacctatcaagaaaagtcttcttcattcatctccttattttcttcatcattat |
42091661 |
T |
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| Q |
119 |
caacctacagcatgtaagtttcattctactacttggtttctctca |
163 |
Q |
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| T |
42091662 |
caacctacagcatgtaagtttcattctactacttggtttctctca |
42091706 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 167 - 198
Target Start/End: Original strand, 42091786 - 42091817
Alignment:
| Q |
167 |
aatattccccaaaatgaggtatatttagaata |
198 |
Q |
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| T |
42091786 |
aatattccccaaaatgaggtatatttagaata |
42091817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 333 - 392
Target Start/End: Complemental strand, 7246605 - 7246546
Alignment:
| Q |
333 |
aaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaact |
392 |
Q |
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| T |
7246605 |
aaagtactgtgaaagacacatgcacagaggtagaaaccgttcaagaaagcctgtggaact |
7246546 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 333 - 390
Target Start/End: Original strand, 52052018 - 52052075
Alignment:
| Q |
333 |
aaagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaa |
390 |
Q |
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| T |
52052018 |
aaagtactgtgaaaggcacatgcatagagggaaaaaccgttcaagaaagcctgtggaa |
52052075 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 337 - 390
Target Start/End: Complemental strand, 18199854 - 18199801
Alignment:
| Q |
337 |
tactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaa |
390 |
Q |
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| T |
18199854 |
tactgtgaaagacacatgcatagaggaaaaaaccgttcaagaaagcctgtggaa |
18199801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0001 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 334 - 390
Target Start/End: Original strand, 399133 - 399189
Alignment:
| Q |
334 |
aagtactgtgaaagacacatgcatcgtggtagaaaccgttcaagaaagcctgtggaa |
390 |
Q |
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| T |
399133 |
aagtactgtgagcgccacatgcaccgtggccgcaaccgttcaagaaagcctgtggaa |
399189 |
T |
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