View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_19 (Length: 485)
Name: NF1763_high_19
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_19 |
 | |
|
| [»] scaffold0072 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0072 (Bit Score: 420; Significance: 0; HSPs: 1)
Name: scaffold0072
Description:
Target: scaffold0072; HSP #1
Raw Score: 420; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 455 - 4
Alignment:
| Q |
13 |
atactattaaacaatgatgtacttgaagctcggtttctgccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
112 |
Q |
| |
|
||||||||||||||||| |||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
455 |
atactattaaacaatgaagtacttgaagcttggtttctgccttcttcatggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
356 |
T |
|
| Q |
113 |
atcgacttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtg |
212 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||| |
|
|
| T |
355 |
atcggcttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaataatacccacaaattcaaacacgtg |
256 |
T |
|
| Q |
213 |
acaactacattttgcttcttttgaaatgtcatgaaaagtcacatgatagttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
255 |
acaactacattttgcttcttttgaaatgtcatgaaaagtcacatgatggttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaaca |
156 |
T |
|
| Q |
313 |
gaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttctt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
155 |
gaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctagaatatcttgaacacttttcgtgtataaatttttgaagcctcttctt |
56 |
T |
|
| Q |
413 |
ccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
55 |
ccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
4 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 393; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 393; E-Value: 0
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 48776098 - 48775654
Alignment:
| Q |
13 |
atactattaaacaatgatgtacttgaagctcggtttctgccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
112 |
Q |
| |
|
||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48776098 |
atactattaaacaatgaagtacttgaggctcggtttctaccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
48775999 |
T |
|
| Q |
113 |
atcgacttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtg |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
48775998 |
atcgacttagaacatattgagaagggagagaataaacatttttcttgatgaatacattcaacaca------caaagaatacccacaaattcaaacatgtg |
48775905 |
T |
|
| Q |
213 |
acaactacattttgcttcttttgaaatgtcatgaaaagtcacatgatagttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaaca |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
48775904 |
acaactacattttgcttcttttgaaatgtcatgaaaaatcacatgatagttaggtttttgtttgtaaatttcatgaatcttgtatgtggaa-cttgaaca |
48775806 |
T |
|
| Q |
313 |
gaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttctt |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48775805 |
gaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttctt |
48775706 |
T |
|
| Q |
413 |
ccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
464 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48775705 |
ccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
48775654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 312; Significance: 1e-176; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 65597 - 65146
Alignment:
| Q |
13 |
atactattaaacaatgatgtacttgaagctcggtttctgccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
112 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
65597 |
atactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaattcctttacttttttctttcttagcatttatggtcc |
65498 |
T |
|
| Q |
113 |
atcgacttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtg |
212 |
Q |
| |
|
|||| ||||||||||||| ||||||||||||||| ||||||||||| ||||||||||| || ||||||||||| ||||| |||||||| ||||||||| | |
|
|
| T |
65497 |
atcggcttagaacatattaagaagggagagaatagacattttcctttatgaatacatttaatacatgtctacagagaattcccacaaactcaaacatgcg |
65398 |
T |
|
| Q |
213 |
acaactacattttgcttcttttgaaatgtcatgaaaagtcacatgatagttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaaca |
312 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
65397 |
acaactacattttgcttcttttgaaatgatctgaaaagtcacatgatagttaggtttttctttgtaaatttcatgaatcttgtatgtggaaacttcatca |
65298 |
T |
|
| Q |
313 |
gaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttctt |
412 |
Q |
| |
|
|||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
65297 |
aaaaacttaactttctctgcgataaatatttgggacccaaccaactcatcctgaaatatcctgaacacttttcttgtataaatttttgaagcctcttctt |
65198 |
T |
|
| Q |
413 |
ccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
464 |
Q |
| |
|
|||| ||||||||||| || | |||||||||||||||||||||||| ||||| |
|
|
| T |
65197 |
ccatgggatataaagtacgtagaagtggttttgaattccttgtcttgacatt |
65146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 165 - 458
Target Start/End: Complemental strand, 22640083 - 22639787
Alignment:
| Q |
165 |
tacattcaacacatgtctacaaagaatacccacaaattcaaacatgtgacaactacattttgcttcttttgaaatgtcatgaaaagtcacatgatagtta |
264 |
Q |
| |
|
|||||| ||||||||| ||| ||||||||| |||||||||||||||||||||||| || ||||| || |||||| |||||||||||||| ||| || |
|
|
| T |
22640083 |
tacatttaacacatgttgacacagaatacccgaaaattcaaacatgtgacaactacaattagcttcattagaaatgatatgaaaagtcacatagtagcta |
22639984 |
T |
|
| Q |
265 |
gg---tttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaacagaaaattcaactttctctgcgataaatatttgggatccaaccaactcat |
361 |
Q |
| |
|
|| ||| | ||||||||| ||||||| |||||||||||||| ||| ||||| |||| ||||| ||| ||||| || | || ||||| ||||||| |
|
|
| T |
22639983 |
ggttttttttctttgtaaatctcatgaaccttgtatgtggaaaaatcacttgaaaaatcaattttctatgcaataaactttcgagaaccaactaactcat |
22639884 |
T |
|
| Q |
362 |
cctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttcttccataggatataaagtgcgcaaaagtggttttgaattccttgtctt |
458 |
Q |
| |
|
|||| || | | || | |||| |||||| | ||||||||| ||||||||||||||||||||||| ||||||| |||||||||||| ||||||| |
|
|
| T |
22639883 |
cctgaaaagttctaaataactttcttgtatagaattttgaagcttcttcttccataggatataaagttcgcaaaaatggttttgaattgattgtctt |
22639787 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 297; Significance: 1e-167; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 51167595 - 51167143
Alignment:
| Q |
13 |
atactattaaacaatgatgtacttgaagctcggtttctgccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
112 |
Q |
| |
|
||||||||||| ||||| ||||||||||||| |||||||||||| || |||||||||||||||| |||||||||||| |||||||||||||||||||||| |
|
|
| T |
51167595 |
atactattaaataatgaagtacttgaagctctgtttctgccttcctcgaggtcttcaattgcaactcctttacttttttctttcttagcatttatggtcc |
51167496 |
T |
|
| Q |
113 |
atcgacttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtg |
212 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| ||||||||||| ||||||||||| || ||||||||| | ||||| |||||||| ||||||||| | |
|
|
| T |
51167495 |
atcggcttagaacatattgagaagggagagaatagacattttcctttatgaatacatttaatacatgtctatagagaattcccacaaagtcaaacatgcg |
51167396 |
T |
|
| Q |
213 |
acaactacattttgcttcttttgaaatgtcatgaaaagtcacatgatagttagg-tttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaac |
311 |
Q |
| |
|
|||||||||||||| ||||||||||||| ||||||||||||||| ||||||| ||| | ||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
51167395 |
acaactacattttggttcttttgaaatgatctgaaaagtcacatgacagttaggttttttctttgtaaatttcatgaatcttgtatgtggaaacttcatc |
51167296 |
T |
|
| Q |
312 |
agaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttct |
411 |
Q |
| |
|
| |||| | ||||||||||||||||||||||||||| ||||||||||||||||| |||||| |||||||||||| ||||||||||||| ||||||||| | |
|
|
| T |
51167295 |
aaaaaacttaactttctctgcgataaatatttgggacccaaccaactcatcctgaaatatcctgaacacttttcttgtataaatttttaaagcctcttat |
51167196 |
T |
|
| Q |
412 |
tccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
464 |
Q |
| |
|
||||| ||||||||||| ||||||||||||||||||||||||||||| ||||| |
|
|
| T |
51167195 |
tccatgggatataaagtacgcaaaagtggttttgaattccttgtcttgacatt |
51167143 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 254; Significance: 1e-141; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 13 - 464
Target Start/End: Complemental strand, 19330493 - 19330036
Alignment:
| Q |
13 |
atactattaaacaatgatgtacttgaagctcggtttctgccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtcc |
112 |
Q |
| |
|
||||||||||||||||| ||||||||||||| |||||| ||||| ||||||||||||||||| | |||| |||| | |||||||||||||| ||||| |
|
|
| T |
19330493 |
atactattaaacaatgaagtacttgaagctctgtttctaccttcctcaaggtcttcaattgccactcctcccattttatttttcttagcatttacggtcc |
19330394 |
T |
|
| Q |
113 |
atcgacttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtg |
212 |
Q |
| |
|
|||||||| ||||||||||||||| | |||||||||||||||||| ||||||||||| ||||||| ||||||| |||||| ||||||||||||||| | |
|
|
| T |
19330393 |
atcgacttgaaacatattgagaaggaaaagaataaacattttcctttatgaatacatttaacacatttctacaacaaatacctacaaattcaaacatgcg |
19330294 |
T |
|
| Q |
213 |
acaactacattttgcttcttttgaaatgtcatgaaaagtcacatg--atagttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaa |
310 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| | |||| || ||| |||||||||||||| |||||||||| |
|
|
| T |
19330293 |
acaactacattttgcttcttttgaaatgatatgaaaagtcacatgatatagttaggtttttctttgccaacttcgtgaatcttgtatgtagaaacttcaa |
19330194 |
T |
|
| Q |
311 |
cagaaaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctc--- |
407 |
Q |
| |
|
||||| |||||||| |||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||| | |||||||||| |
|
|
| T |
19330193 |
cagaagattcaactctctctgtgataaatatttgggatccaaccaactcatcctgaaatatcttgaacacttttcttgtataaactcttgaagcctcttc |
19330094 |
T |
|
| Q |
408 |
-ttcttccataggatataaagtgcgcaaaagtggttttgaattccttgtcttaacatt |
464 |
Q |
| |
|
||||||||||| ||||||||| | ||||||||||||||||||||||||||| ||||| |
|
|
| T |
19330093 |
tttcttccatagaatataaagtacacaaaagtggttttgaattccttgtcttgacatt |
19330036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 321 - 454
Target Start/End: Complemental strand, 8628337 - 8628202
Alignment:
| Q |
321 |
aactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttcttccat---- |
416 |
Q |
| |
|
|||||| | ||||| ||||||||| || ||||||||||| ||||| ||| ||| |||| ||||| ||| |||| | |||| || ||||||||||| |
|
|
| T |
8628337 |
aactttttttgcgacaaatatttgagagccaaccaactcttcctgaaat--ctttaacatttttcttgtgtaaactcttgatgcttcttcttccattgaa |
8628240 |
T |
|
| Q |
417 |
aggatataaagtgcgcaaaagtggttttgaattccttg |
454 |
Q |
| |
|
|||||||||||| |||||||||| |||||||| |||| |
|
|
| T |
8628239 |
aggatataaagttggcaaaagtggctttgaatttcttg |
8628202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 88 - 152
Target Start/End: Complemental strand, 8628503 - 8628439
Alignment:
| Q |
88 |
ttgtctttcttagcatttatggtccatcgacttagaacatattgagaagggagagaataaacatt |
152 |
Q |
| |
|
||||||||||||||||| | |||||||| | |||||||||||| || ||||| ||||||||||| |
|
|
| T |
8628503 |
ttgtctttcttagcattaagggtccatctatgtagaacatattgtgatgggagtgaataaacatt |
8628439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 137 - 216
Target Start/End: Complemental strand, 16914176 - 16914098
Alignment:
| Q |
137 |
ggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtgacaa |
216 |
Q |
| |
|
|||||||||||||||||| ||| | ||||||| | || |||| ||||||||||||| ||| ||| |||||| |||||||| |
|
|
| T |
16914176 |
ggagagaataaacatttttcttaaggaatacagttaagacatatctacaaagaata-ccaaaaaatcaaacttgtgacaa |
16914098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 140; Significance: 4e-73; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 140; E-Value: 4e-73
Query Start/End: Original strand, 15 - 458
Target Start/End: Original strand, 44884450 - 44884893
Alignment:
| Q |
15 |
actattaaacaatgatgtacttgaagctcggtttctgccttcttcaaggtcttcaattgcaagtcctttacttttgtctttcttagcatttatggtccat |
114 |
Q |
| |
|
||||||||||||||| || || |||||| ||||| ||||||| | |||||||||| | ||||| | ||| |||||||| |||||| ||||||| |
|
|
| T |
44884450 |
actattaaacaatgaagtgctagaagcttcgtttcctccttcttggaattcttcaattgtcaatccttcaaatttttctttcttggcatttcgggtccat |
44884549 |
T |
|
| Q |
115 |
cgacttagaacatattgagaagggagagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtgac |
214 |
Q |
| |
|
|| ||||||||| || ||||||||| ||| || |||| ||| | ||| ||| | || | ||| |||||||||||||| | | |||||||| |||||| |
|
|
| T |
44884550 |
cgttgtagaacatactgtgaagggagataatgtacctttttctttaggaacacagttaagatatgcctacaaagaataccaaaagattcaaacttgtgac |
44884649 |
T |
|
| Q |
215 |
aactacattttgcttcttttgaaatgtcatgaaaagtcacatgatagttaggtttctgtttgtaaatttcatgaatcttgtatgtggaaacttcaacaga |
314 |
Q |
| |
|
|| |||| |||||||||| ||| | ||||||||| |||||||||||| || |||| ||||||||||||||||| |||||||| | |||||| |||| |
|
|
| T |
44884650 |
aagtacaagttgcttctttcgaagttacatgaaaagccacatgatagtttggcttctctttgtaaatttcatgaactttgtatgttgccacttcatcaga |
44884749 |
T |
|
| Q |
315 |
aaattcaactttctctgcgataaatatttgggatccaaccaactcatcctggaatatcttgaacacttttcgtgtataaatttttgaagcctcttcttcc |
414 |
Q |
| |
|
||||||||||||||| | | |||| ||||| || |||||||||||||| || ||||||| |||| ||||| |||||||||||||||||| ||||||||| |
|
|
| T |
44884750 |
aaattcaactttctcggtggtaaacatttgagagccaaccaactcatcttgaaatatctcaaacaattttcctgtataaatttttgaagcttcttcttcc |
44884849 |
T |
|
| Q |
415 |
ataggatataaagtgcgcaaaagtggttttgaattccttgtctt |
458 |
Q |
| |
|
|| ||||||||||| ||||||||||||||||||||| ||||||| |
|
|
| T |
44884850 |
atgggatataaagttcgcaaaagtggttttgaattcattgtctt |
44884893 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 140 - 237
Target Start/End: Complemental strand, 42106006 - 42105910
Alignment:
| Q |
140 |
gagaataaacattttccttgatgaatacattcaacacatgtctacaaagaatacccacaaattcaaacatgtgacaactacattttgcttcttttgaa |
237 |
Q |
| |
|
||||||||||||||| ||| | ||||||| | || |||||||||||||||||| ||| ||| |||||| ||| |||| |||| ||||||| |||||| |
|
|
| T |
42106006 |
gagaataaacatttttcttaaggaatacacttaagacatgtctacaaagaata-ccaaaaaatcaaacttgtaacaattacaagttgcttcatttgaa |
42105910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University