View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_2 (Length: 1033)

Name: NF1763_high_2
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_2
NF1763_high_2
[»] chr6 (5 HSPs)
chr6 (17-523)||(28940442-28940943)
chr6 (862-1015)||(28939803-28939953)
chr6 (660-862)||(28939979-28940179)
chr6 (604-642)||(28940198-28940236)
chr6 (958-998)||(20701310-20701350)
[»] scaffold0039 (1 HSPs)
scaffold0039 (65-142)||(29043-29120)
[»] chr1 (5 HSPs)
chr1 (87-144)||(50391950-50392007)
chr1 (958-1005)||(31615903-31615950)
chr1 (87-142)||(11199965-11200020)
chr1 (244-290)||(37170191-37170237)
chr1 (244-290)||(37170431-37170477)
[»] chr7 (2 HSPs)
chr7 (61-144)||(2463175-2463256)
chr7 (55-142)||(7631266-7631352)
[»] chr4 (2 HSPs)
chr4 (88-124)||(8178649-8178685)
chr4 (99-140)||(4235910-4235951)
[»] chr2 (3 HSPs)
chr2 (56-142)||(19548157-19548241)
chr2 (88-142)||(10066574-10066628)
chr2 (97-147)||(12894286-12894336)
[»] chr5 (1 HSPs)
chr5 (88-138)||(18415615-18415665)
[»] scaffold0548 (1 HSPs)
scaffold0548 (61-134)||(4137-4209)
[»] chr3 (3 HSPs)
chr3 (87-140)||(37626643-37626696)
chr3 (91-144)||(42059854-42059907)
chr3 (93-142)||(43978636-43978685)


Alignment Details
Target: chr6 (Bit Score: 443; Significance: 0; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 443; E-Value: 0
Query Start/End: Original strand, 17 - 523
Target Start/End: Complemental strand, 28940943 - 28940442
Alignment:
Q  17 atacttgacggggggattgttagatattggacgttagcagttaagtctcacatcgactagaaaatgaagaaaaatgttggatatataagagaagagactc 116  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  28940943 atacttgacggggggattgttagatattggacgtgagcagttaagtctcacatcgactagaaaatgaagaaaaatgttggacatataagagaagagactc 28940844  T
Q  117 gtatacctaatgtcttaagattttggataaaagtatatggtgccttttttcgcttgtgtggttgctcttgtctaagatgggtggtcccccaatgcttccc 216  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||    
T  28940843 gtatacctaatgtcttaagattttggataaaagtatatggtgccttttttcgcttgtgttgttgctcttgtctaagatgggtggtcccccaaggcttccc 28940744  T
Q  217 tcaaagcccaacaactgtattagagtcatggttggacgaaaggtttgaacaactccttgtgttgaaaatctttctcgcaagttgtctaggcggtgggttc 316  Q
    |||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28940743 tcaaagcccaacaactatattagagtcatggttggacgaaaggtttgaacaactccttgtgttgaaaatctttctcgcaagttgtctaggcggtgggttc 28940644  T
Q  317 tattagtgcgcatcgacaacgaagttacaagcaaatgtgtgcggatgaaagattcttgagagaaatattgttgtgtgcaattgtgagttagaagtgaaat 416  Q
    | ||||||||| ||||||||||||||||||||||||||     |||||||||||||||||||||||||||||||| ||||||||||||||||||| | ||    
T  28940643 tgttagtgcgcttcgacaacgaagttacaagcaaatgt-----gatgaaagattcttgagagaaatattgttgtgcgcaattgtgagttagaagtaagat 28940549  T
Q  417 tgttggataaagatgtggacgactcacatttgagagagaagattcttgaatatcaagtttgagtagttaaatcccacatatgtaggaagtacttgtatct 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  28940548 tgttggataaagatgtggacgactcacatttgagagagaagattcttgaatatcaagtgtgagtagttaaatcccacatatgtaggaagtacttgtatct 28940449  T
Q  517 attgttt 523  Q
    |||||||    
T  28940448 attgttt 28940442  T

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Target: chr6; HSP #2
Raw Score: 140; E-Value: 8e-73
Query Start/End: Original strand, 862 - 1015
Target Start/End: Complemental strand, 28939953 - 28939803
Alignment:
Q  862 caaccacagttgattcatgcagaactcttaaaactcaagtatataataaggcccctttacataggagaaatatctgcatcactttaacgacatcactatt 961  Q
    ||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939953 caaccacagttgattcatgcagaactcttaaaactcaagtatataa---ggcccctttacataggagaaatatctgcatcactttaacgacatcactatt 28939857  T
Q  962 acatgataatagtaaagaagatagcttaggcttcaagtaatctaagtctagctt 1015  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28939856 acatgataatagtaaagaagatagcttaggcttcaagtaatctaagtctagctt 28939803  T

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Target: chr6; HSP #3
Raw Score: 127; E-Value: 5e-65
Query Start/End: Original strand, 660 - 862
Target Start/End: Complemental strand, 28940179 - 28939979
Alignment:
Q  660 tgatgtgataggtgaagagaaatggtgaaaaat---gaggtattgaatagatgtaagaaagtaaagggggtcaattcatcatttttgtttttaaataaaa 756  Q
    ||||||||||| |||||||||||||||||||||   ||||||||||||||||||||||||||||| |||||| ||| ||||||||| || ||||| |||     
T  28940179 tgatgtgatagatgaagagaaatggtgaaaaattatgaggtattgaatagatgtaagaaagtaaatggggtctatttatcatttttattgttaaa-aaat 28940081  T
Q  757 tgaattgatattgagctaaggcctatacaaaagatctttacaccaaagtccataactaaacgctcatcacacccctatataggagaatcactttcttata 856  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||      |||||||||||||||    
T  28940080 taaattgatattgagctaaggcctatacaaaagatctttacaccaaagtccataactaaacgctcatcacacccctata----gtaatcactttcttata 28939985  T
Q  857 ataatc 862  Q
    ||||||    
T  28939984 ataatc 28939979  T

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Target: chr6; HSP #4
Raw Score: 39; E-Value: 0.000000000002
Query Start/End: Original strand, 604 - 642
Target Start/End: Complemental strand, 28940236 - 28940198
Alignment:
Q  604 caaaaggaaaatgttttgatggttattcaccttaaagtg 642  Q
    |||||||||||||||||||||||||||||||||||||||    
T  28940236 caaaaggaaaatgttttgatggttattcaccttaaagtg 28940198  T

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Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000006
Query Start/End: Original strand, 958 - 998
Target Start/End: Complemental strand, 20701350 - 20701310
Alignment:
Q  958 tattacatgataatagtaaagaagatagcttaggcttcaag 998  Q
    ||||||| ||||||||||||||||||||||||| |||||||    
T  20701350 tattacaagataatagtaaagaagatagcttagacttcaag 20701310  T

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Target: scaffold0039 (Bit Score: 38; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 65 - 142
Target Start/End: Original strand, 29043 - 29120
Alignment:
Q  65 cacatcgactagaaaatgaagaaaaatgttggatat--ataagagaagagactcgtatacctaatgtcttaagattttgg 142  Q
    ||||||||||||||||||||  ||||||||||||||  |||||||| | ||||| |||| || |||||||||||||||||    
T  29043 cacatcgactagaaaatgaa--aaaatgttggatatatataagagaggggactcatatatctgatgtcttaagattttgg 29120  T

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Target: chr1 (Bit Score: 38; Significance: 0.000000000006; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 144
Target Start/End: Complemental strand, 50392007 - 50391950
Alignment:
Q  87 aaaatgttggatatataagagaagagactcgtatacctaatgtcttaagattttggat 144  Q
    |||||||||||||||||||| | | ||||| |||||||||||||||||| ||||||||    
T  50392007 aaaatgttggatatataagatatgtgactcatatacctaatgtcttaaggttttggat 50391950  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 958 - 1005
Target Start/End: Original strand, 31615903 - 31615950
Alignment:
Q  958 tattacatgataatagtaaagaagatagcttaggcttcaagtaatcta 1005  Q
    ||||||||||||||||||||||||||||||||| || |||| ||||||    
T  31615903 tattacatgataatagtaaagaagatagcttagactccaagcaatcta 31615950  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 87 - 142
Target Start/End: Original strand, 11199965 - 11200020
Alignment:
Q  87 aaaatgttggatatataagagaagagactcgtatacctaatgtcttaagattttgg 142  Q
    |||||||||||||||||||||| | ||||| ||| ||||||| |||||| ||||||    
T  11199965 aaaatgttggatatataagagaggtgactcatatgcctaatgccttaaggttttgg 11200020  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 290
Target Start/End: Original strand, 37170191 - 37170237
Alignment:
Q  244 atggttggacgaaaggtttgaacaactccttgtgttgaaaatctttc 290  Q
    |||||| || ||||||||| |||||||||||||||||||| ||||||    
T  37170191 atggttcgatgaaaggtttaaacaactccttgtgttgaaagtctttc 37170237  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 244 - 290
Target Start/End: Complemental strand, 37170477 - 37170431
Alignment:
Q  244 atggttggacgaaaggtttgaacaactccttgtgttgaaaatctttc 290  Q
    |||||| || ||||||||| |||||||||||||||||||| ||||||    
T  37170477 atggttcgatgaaaggtttaaacaactccttgtgttgaaagtctttc 37170431  T

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Target: chr7 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 61 - 144
Target Start/End: Original strand, 2463175 - 2463256
Alignment:
Q  61 gtctcacatcgactagaaaatgaagaaaaatgttggatatataagagaagagactcgtatacctaatgtcttaagattttggat 144  Q
    ||||||||||||||||||||||| ||||  |||||||||||||||||||  ||| | ||||||||| | || ||| ||||||||    
T  2463175 gtctcacatcgactagaaaatgaggaaa--tgttggatatataagagaatggacccatatacctaaagcctaaaggttttggat 2463256  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 55 - 142
Target Start/End: Complemental strand, 7631352 - 7631266
Alignment:
Q  55 agttaagtctcacatcgactagaaaatgaagaaaaatgttggatatataagagaagaga-ctcgtatacctaatgtcttaagattttgg 142  Q
    ||||||||| |||||||||| ||||||| |||||| |||||||||||||||||| |||| | | ||||||||||| |||||| ||||||    
T  7631352 agttaagtcccacatcgact-gaaaatggagaaaa-tgttggatatataagagaggagaccccatatacctaatggcttaagcttttgg 7631266  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 124
Target Start/End: Original strand, 8178649 - 8178685
Alignment:
Q  88 aaatgttggatatataagagaagagactcgtatacct 124  Q
    |||||||||||||||||||||||||||||||||||||    
T  8178649 aaatgttggatatataagagaagagactcgtatacct 8178685  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 140
Target Start/End: Complemental strand, 4235951 - 4235910
Alignment:
Q  99 atataagagaagagactcgtatacctaatgtcttaagatttt 140  Q
    |||||||||||| ||||||||||||||||||| |||| ||||    
T  4235951 atataagagaagtgactcgtatacctaatgtcataaggtttt 4235910  T

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Target: chr2 (Bit Score: 36; Significance: 0.0000000001; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.0000000001
Query Start/End: Original strand, 56 - 142
Target Start/End: Original strand, 19548157 - 19548241
Alignment:
Q  56 gttaagtctcacatcgactagaaaatgaagaaaaatgttggatatataagagaagagactcgtatacctaatgtcttaagattttgg 142  Q
    |||| ||| |||||||||||||||  || ||||  |||||||||||||||||| ||||| | |||| ||||||||||||| ||||||    
T  19548157 gttatgtcccacatcgactagaaatagaggaaa--tgttggatatataagagaggagacccatatatctaatgtcttaaggttttgg 19548241  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 88 - 142
Target Start/End: Original strand, 10066574 - 10066628
Alignment:
Q  88 aaatgttggatatataagagaagagactcgtatacctaatgtcttaagattttgg 142  Q
    ||||||||||||||||||| | ||||  | ||||||||||| |||||||||||||    
T  10066574 aaatgttggatatataagataggagatccatatacctaatgccttaagattttgg 10066628  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000009
Query Start/End: Original strand, 97 - 147
Target Start/End: Complemental strand, 12894336 - 12894286
Alignment:
Q  97 atatataagagaagagactcgtatacctaatgtcttaagattttggataaa 147  Q
    |||||||| |||||||| |  ||||| ||||||||||||||||||||||||    
T  12894336 atatataaaagaagagatttatatacataatgtcttaagattttggataaa 12894286  T

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Target: chr5 (Bit Score: 35; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000004
Query Start/End: Original strand, 88 - 138
Target Start/End: Complemental strand, 18415665 - 18415615
Alignment:
Q  88 aaatgttggatatataagagaagagactcgtatacctaatgtcttaagatt 138  Q
    ||||||||||||||||||| | ||||||| || ||||||||||||||||||    
T  18415665 aaatgttggatatataagataggagactcataaacctaatgtcttaagatt 18415615  T

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Target: scaffold0548 (Bit Score: 30; Significance: 0.0000004; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 61 - 134
Target Start/End: Complemental strand, 4209 - 4137
Alignment:
Q  61 gtctcacatcgactagaaaatgaagaaaaatgttggatatataagagaagagactcgtatacctaatgtcttaa 134  Q
    ||||||||||||||| ||| || || |||||||||||||||| ||||| | ||| | ||||||| |||||||||    
T  4209 gtctcacatcgactataaa-tggaggaaaatgttggatatatgagagaggggacacatatacctcatgtcttaa 4137  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 140
Target Start/End: Original strand, 37626643 - 37626696
Alignment:
Q  87 aaaatgttggatatataagagaagagactcgtatacctaatgtcttaagatttt 140  Q
    |||||||||||||||||||||| |  |  | |||||||||||||||||||||||    
T  37626643 aaaatgttggatatataagagaggtcatacatatacctaatgtcttaagatttt 37626696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 91 - 144
Target Start/End: Complemental strand, 42059907 - 42059854
Alignment:
Q  91 tgttggatatataagagaagagactcgtatacctaatgtcttaagattttggat 144  Q
    |||| ||||||||||||| | ||| | |||||||||||||||||| ||||||||    
T  42059907 tgtttgatatataagagaggggacacttatacctaatgtcttaaggttttggat 42059854  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 142
Target Start/End: Complemental strand, 43978685 - 43978636
Alignment:
Q  93 ttggatatataagagaagagactcgtatacctaatgtcttaagattttgg 142  Q
    |||||||||||||||| ||||||| |||||||| || |||||| ||||||    
T  43978685 ttggatatataagagaggagactcatatacctattgccttaaggttttgg 43978636  T

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