View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_20 (Length: 481)
Name: NF1763_high_20
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_20 |
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| [»] chr6 (5 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 132; Significance: 2e-68; HSPs: 5)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 299 - 481
Target Start/End: Original strand, 5064995 - 5065178
Alignment:
| Q |
299 |
agaaccaacccacgcactacagtttatacttctcattcagaaaacttttttcataccttttatgtacactggtaatgaatgtttaaaactttttcatata |
398 |
Q |
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| T |
5064995 |
agaaccaatccacacactacagtttatacttcccattcagaaaacttctatcataccttttatgtacactcgtaatgaatgtttaaaacttcttcatata |
5065094 |
T |
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| Q |
399 |
ttgatgattttacaatgatagaaccaatgaatatatatgaaatttctaaagcctaacagaag-aaaatgaacgaaggcagattg |
481 |
Q |
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| T |
5065095 |
ttgatgattttacaatgatagaaccaacgaatacatatgaaatttctaaagcctaacagaagaaaaatgaacaaaagcagattg |
5065178 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 66; E-Value: 6e-29
Query Start/End: Original strand, 328 - 481
Target Start/End: Complemental strand, 5346766 - 5346616
Alignment:
| Q |
328 |
ttctcattcagaaaacttttttcataccttttatgtacactggtaatgaatgtttaaaactttttcatatattgatgattttacaatgatagaaccaatg |
427 |
Q |
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| T |
5346766 |
ttctcattcagacaacttttatcattttttttaagtacactggtaatgaatgtttaaaatttctt----tatcgatgattttacaatgatataaccaata |
5346671 |
T |
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| Q |
428 |
aatatatatgaaatttctaaagcctaacagaag-aaaatgaacgaaggcagattg |
481 |
Q |
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| T |
5346670 |
aatacatatggaatttctacagcctaaaagaagaaaaatgaacaaaggcagattg |
5346616 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 186 - 258
Target Start/End: Original strand, 5059278 - 5059350
Alignment:
| Q |
186 |
tccagtttttaaaacattggtacaaagtgaatgttcaaacttttcttaagggatgattttacaatgagaaaac |
258 |
Q |
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| T |
5059278 |
tccagtttttaaaacattggcacaaagtgaatgttcatacttttcttaagggatgattttaccataagaaaac |
5059350 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 47
Target Start/End: Complemental strand, 5266691 - 5266657
Alignment:
| Q |
13 |
caaataagaccatagtagtggcacaaatcaaactg |
47 |
Q |
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| T |
5266691 |
caaataagaccatagtagtggcacaaatcaaactg |
5266657 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 218 - 254
Target Start/End: Original strand, 5168671 - 5168707
Alignment:
| Q |
218 |
gttcaaacttttcttaagggatgattttacaatgaga |
254 |
Q |
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| T |
5168671 |
gttcaaactttttttaagtgatgattttacaatgaga |
5168707 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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