View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_23 (Length: 450)
Name: NF1763_high_23
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_23 |
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Alignment Details
Target: chr1 (Bit Score: 408; Significance: 0; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Complemental strand, 8001239 - 8000820
Alignment:
| Q |
16 |
ataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctg |
115 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8001239 |
ataacgattcttgataaaaatcaatgacaaatcacatagtgatatcatcaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctg |
8001140 |
T |
|
| Q |
116 |
agcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8001139 |
agcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaa |
8001040 |
T |
|
| Q |
216 |
caactgcaatggcaaacctttggagctcacccccagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaagtttttcctt |
315 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
8001039 |
caactgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaagtttttcctt |
8000940 |
T |
|
| Q |
316 |
catatctctctcattttttgagtctagcgtctgccccacgttcccttgcacagcttttggaatgtggtcaacatattgaggcttaatgatagcctgtgat |
415 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8000939 |
catatctctctcattttttgagtctagcgtctgccccacgttcccttgcacagcttttggaatgtggtcaacatattgaggcttaatgatagcctgtgat |
8000840 |
T |
|
| Q |
416 |
gtaacgtatattgaaataag |
435 |
Q |
| |
|
|||||||||||||||||||| |
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|
| T |
8000839 |
gtaacgtatattgaaataag |
8000820 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 335; E-Value: 0
Query Start/End: Original strand, 16 - 435
Target Start/End: Original strand, 7907108 - 7907529
Alignment:
| Q |
16 |
ataacgattcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctg |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7907108 |
ataacgattcttgataaaaatcaatgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctg |
7907207 |
T |
|
| Q |
116 |
agcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaa |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7907208 |
agcaatgaccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaa |
7907307 |
T |
|
| Q |
216 |
caactgcaatggcaaacctttggagctcacccccagaaagatcaccaacattacgatctataacttgattaagctcgagatcag--cacaaagtttttcc |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||| |||||| |
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|
| T |
7907308 |
caactgcaatggcaaacctttggagctcaccccctgaaagatcaccaacattacgatctataacttgattaagttcaagatcagcacacaaagcttttcc |
7907407 |
T |
|
| Q |
314 |
ttcatatctctctcattttttgagtctagcgtctgccccacgttcccttgcacagcttttggaatgtggtcaacatattgaggcttaatgatagcctgtg |
413 |
Q |
| |
|
||||||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||| |||| ||||||| |
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|
| T |
7907408 |
ttcatatctctctcatttttttggtctagcacttgccccacgttcccttgcacatggtttggaatgtcgtcaacatattgaggcttgatgacagcctgta |
7907507 |
T |
|
| Q |
414 |
atgtaacgtatattgaaataag |
435 |
Q |
| |
|
||||||||||| ||||||||| |
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|
| T |
7907508 |
ttgtaacgtatagtgaaataag |
7907529 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 24 - 412
Target Start/End: Complemental strand, 51516531 - 51516144
Alignment:
| Q |
24 |
tcttgataaaaatcaacgacaaatcacatagtgatatcaacaatgtttaaagcagaaactacaaaggaaaggaaacaaacctattaggcctgagcaatga |
123 |
Q |
| |
|
|||||| ||||||||| |||| ||||||||||||||| ||| | |||||||||| ||||| |||||| ||| |||||||||||||||||||||||| |
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|
| T |
51516531 |
tcttgacaaaaatcaatgacagtgcacatagtgatatcacaaatatataaagcagaagctacagaggaaattaaa-aaacctattaggcctgagcaatga |
51516433 |
T |
|
| Q |
124 |
ccgaacaacttgcgcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgca |
223 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
51516432 |
tcgaacaacttgggcagctttcagcctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaaccgca |
51516333 |
T |
|
| Q |
224 |
atggcaaacctttggagctcacccccagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaagtttttccttcatatctc |
323 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| |
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|
| T |
51516332 |
atggcaaacctttggagctcaccccctgaaagatcaccaacattacgatctataacttgattaagctcaagatcagcacaaagcctttccttcatgtctc |
51516233 |
T |
|
| Q |
324 |
tctcattttttgagtctagcgtctgccccacgttcccttgcacagcttttggaatgtggtcaacatattgaggcttaatgatagcctgt |
412 |
Q |
| |
|
||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||| |
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|
| T |
51516232 |
tctcatttttttggtctagcacctgccccacattcccttgcacagcttttggaatgtggtcaacatactgaggcttgatgatagcctgt |
51516144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 50 - 435
Target Start/End: Original strand, 1302544 - 1302930
Alignment:
| Q |
50 |
catagtgatatcaacaatgtttaaagcagaaactacaaagg-aaaggaaacaaacctattaggcctgagcaatgaccgaacaacttgcgcagctttcagc |
148 |
Q |
| |
|
||||||||||| ||||| |||||||||||| ||||| | ||| ||||| |||||||| |||| ||||||||||| |||||||| |||||||||||| |
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|
| T |
1302544 |
catagtgatattgacaatatttaaagcagaagctacagatataaaataaacagacctattatgccttagcaatgaccggacaacttgggcagctttcagc |
1302643 |
T |
|
| Q |
149 |
ctctgtttcacatcaagataactggaaggttcatcaaacatgtatatctcagcattttggatggcaacaactgcaatggcaaacctttggagctcacccc |
248 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||| | ||||||||||||||||||| |||||||||| |
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|
| T |
1302644 |
ctctgtttcacatcaagataactagaaggttcatcaaacatgtatatctccgcattttggatggcaatacctgcaatggcaaacctttgaagctcacccc |
1302743 |
T |
|
| Q |
249 |
cagaaagatcaccaacattacgatctataacttgattaagctcgagatcagcacaaagtttttccttcatatctctctcattttttgagtctagcgtctg |
348 |
Q |
| |
|
| ||||||||| ||||||||||||||||||||||||||||||| ||| |||||||||| | ||||||||||||||||||||| ||| |||||||| ||| |
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|
| T |
1302744 |
ctgaaagatcaacaacattacgatctataacttgattaagctcaagagcagcacaaagctcttccttcatatctctctcattcttttggtctagcgcctg |
1302843 |
T |
|
| Q |
349 |
ccccacgttcccttgcacagcttttggaatgtggtcaacatattgaggcttaatgatagcctgtgatgtaacgtatattgaaataag |
435 |
Q |
| |
|
||| || ||| ||||| | | || ||| || |||||||| |||||||| |||||||||||| | |||| ||| |||||||||| |
|
|
| T |
1302844 |
cccaacattcacttgctcctttcttcgaaagtcatcaacatactgaggcttgatgatagcctgtattataacatatgttgaaataag |
1302930 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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