View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_25 (Length: 434)

Name: NF1763_high_25
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_25
NF1763_high_25
[»] chr7 (8 HSPs)
chr7 (21-177)||(31271866-31272024)
chr7 (21-177)||(7505447-7505605)
chr7 (295-361)||(10993172-10993238)
chr7 (253-359)||(47381492-47381598)
chr7 (253-326)||(7505258-7505331)
chr7 (253-327)||(31272131-31272205)
chr7 (290-327)||(2621489-2621526)
chr7 (290-327)||(16526208-16526245)
[»] chr3 (5 HSPs)
chr3 (21-177)||(19976002-19976163)
chr3 (263-359)||(33982979-33983075)
chr3 (253-327)||(19975800-19975874)
chr3 (290-360)||(21389730-21389800)
chr3 (263-360)||(24310788-24310885)
[»] chr4 (8 HSPs)
chr4 (21-177)||(19240985-19241138)
chr4 (263-360)||(3415235-3415332)
chr4 (263-359)||(32767570-32767666)
chr4 (253-344)||(44341197-44341288)
chr4 (290-359)||(52464145-52464214)
chr4 (263-327)||(43286284-43286348)
chr4 (139-177)||(51204242-51204280)
chr4 (290-327)||(19240790-19240827)
[»] chr6 (6 HSPs)
chr6 (21-126)||(27966449-27966554)
chr6 (74-177)||(27966550-27966649)
chr6 (253-345)||(27966766-27966858)
chr6 (263-346)||(20139215-20139298)
chr6 (263-346)||(22193571-22193654)
chr6 (290-349)||(31472538-31472597)
[»] chr8 (3 HSPs)
chr8 (253-359)||(42739374-42739480)
chr8 (291-327)||(45451820-45451856)
chr8 (290-360)||(3940656-3940727)
[»] chr5 (4 HSPs)
chr5 (290-361)||(9996226-9996297)
chr5 (290-359)||(38976295-38976364)
chr5 (290-344)||(24477286-24477340)
chr5 (290-334)||(6453024-6453068)
[»] chr2 (4 HSPs)
chr2 (263-346)||(15614178-15614261)
chr2 (263-360)||(5271059-5271156)
chr2 (290-329)||(4564936-4564975)
chr2 (290-327)||(40861091-40861128)
[»] chr1 (1 HSPs)
chr1 (276-327)||(46237631-46237682)


Alignment Details
Target: chr7 (Bit Score: 132; Significance: 2e-68; HSPs: 8)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 21 - 177
Target Start/End: Original strand, 31271866 - 31272024
Alignment:
Q  21 acttagcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagagg 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||     
T  31271866 acttatcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgctatatcagaga 31271965  T
Q  121 c--ttgtgttttttctactcagcttgagtggattgaggccattaataatattagctgtt 177  Q
    |  ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  31271966 cttttgtgttttttctgctcagcttgagtggattgaggccattaataatattagctgtt 31272024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 7505605 - 7505447
Alignment:
Q  21 acttagcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagagg 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||||    
T  7505605 acttatcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcagtaagcttcttatgttagattgctactgctacatcagagg 7505506  T
Q  121 c--ttgtgttttttctactcagcttgagtggattgaggccattaataatattagctgtt 177  Q
    |  ||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||    
T  7505505 cttttgtgttttttctgctcagcttgagtggattgaggccattaataatattagttgtt 7505447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 295 - 361
Target Start/End: Complemental strand, 10993238 - 10993172
Alignment:
Q  295 caattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaat 361  Q
    |||||||| ||| |||||||||||||||||||| | |||||  |||||||||||| |||||||||||    
T  10993238 caattattcggcccaagccctacattttattcgggctttcgggccggcccattttgacagctctaat 10993172  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 47381492 - 47381598
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaac 352  Q
    |||| |||| |||| ||||||  |||||||||||   |||| |||||||||||| |||||||||| |||||| ||  ||||||  |||||||||||| ||    
T  47381492 ttttttgggccgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttatgcggattttcgggccggcccattttgac 47381591  T
Q  353 agctcta 359  Q
    |||||||    
T  47381592 agctcta 47381598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 253 - 326
Target Start/End: Complemental strand, 7505331 - 7505258
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattc 326  Q
    ||||| ||| |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||||||||||||    
T  7505331 ttttacgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacattttattc 7505258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 327
Target Start/End: Original strand, 31272131 - 31272205
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 327  Q
    ||||| ||| |||| ||||||  |||||||||||    |||||||||||||||| ||||||||||||||||||||    
T  31272131 ttttacgggccgggctaaaaagccctggaaaaattcgtgctgcaattattaggcccaagccctacattttattcg 31272205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 2621489 - 2621526
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcg 327  Q
    ||||||||||||||||||||| |||||| |||||||||    
T  2621489 ggctgcaattattaggctcaaaccctacgttttattcg 2621526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 16526245 - 16526208
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcg 327  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  16526245 ggctccaattattcggctcaagccctacattttattcg 16526208  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 118; Significance: 5e-60; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 118; E-Value: 5e-60
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 19976163 - 19976002
Alignment:
Q  21 acttagcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagagg 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||    
T  19976163 acttatcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcagtaagcttcttatgttagattgctactgctatatcagagg 19976064  T
Q  121 cttgtg-----ttttttctactcagcttgagtggattgaggccattaataatattagctgtt 177  Q
     || ||     |||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19976063 attttgtgtttttttttctgctcagcttgagtggattgaggccattaataatattagctgtt 19976002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 33983075 - 33982979
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 359  Q
    |||| ||||||  |||||||||||   |||| |||||||||||| |||||||||||||||||| | | |||||  |||||||||||| |||||||||    
T  33983075 cgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacattttatttgggctttcgggccggcccattttgacagctcta 33982979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 253 - 327
Target Start/End: Complemental strand, 19975874 - 19975800
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 327  Q
    ||||| ||| |||| ||||||  |||||||||||   ||||||||||||||| | ||||||||||||||||||||    
T  19975874 ttttacgggccgggctaaaaagccctggaaaaattcgggctgcaattattagacccaagccctacattttattcg 19975800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 21389800 - 21389730
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 360  Q
    |||||| ||| |||||| ||||||||||||||| |||  | |||||| ||||||| |||| ||||||||||    
T  21389800 ggctgccatttttaggcccaagccctacatttttttcaggctttcgagccggcccgttttgacagctctaa 21389730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 24310885 - 24310788
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 360  Q
    |||| |||||||||||  ||||||   |||||||||| |||||   || |||||| ||||||||| |||||||  ||||||| |||| ||||||||||    
T  24310885 cgggctaaaaaatcctaaaaaaattcgggctgcaatttttaggtctaaaccctacgttttattcgggttttcgggccggcccgttttgacagctctaa 24310788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 96; Significance: 6e-47; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 96; E-Value: 6e-47
Query Start/End: Original strand, 21 - 177
Target Start/End: Complemental strand, 19241138 - 19240985
Alignment:
Q  21 acttagcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagagg 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||     ||  |||||    
T  19241138 acttatcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcagtaagcttcttatgttagattgttac-----tactagagg 19241044  T
Q  121 c--ttgtgttttttctactcagcttgagtggattgaggccattaataatattagctgtt 177  Q
    |  ||||||||||||| ||||| ||||||||||||||||||||||||||||||| ||||    
T  19241043 cttttgtgttttttctgctcagtttgagtggattgaggccattaataatattagttgtt 19240985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 263 - 360
Target Start/End: Original strand, 3415235 - 3415332
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 360  Q
    |||| ||||||  |||||||||||   |||| |||||||||||| |||||||||| ||||||||| | |||||  |||||||||||| ||||||||||    
T  3415235 cgggctaaaaagccctggaaaaattcgggctccaattattaggcccaagccctacgttttattcgggctttcgggccggcccattttgacagctctaa 3415332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 263 - 359
Target Start/End: Complemental strand, 32767666 - 32767570
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 359  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| ||||||||| |||||||||| | |||||  ||||||| |||| |||||||||    
T  32767666 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcgggccggcccgttttgacagctcta 32767570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 253 - 344
Target Start/End: Complemental strand, 44341288 - 44341197
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggccc 344  Q
    ||||| ||| |||| ||||||  ||||||| ||||  | ||||||||||| ||| |||||||||||||||||||| | ||||| ||||||||    
T  44341288 ttttacgggccgggctaaaaagccctggaagaatccggactgcaattattcggcccaagccctacattttattcgggctttcggaccggccc 44341197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 52464145 - 52464214
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 359  Q
    ||||| ||||||||||| |||||||||| ||||||||| | |||||  ||||||| |||| |||||||||    
T  52464145 ggctgtaattattaggcccaagccctacgttttattcgggctttcgggccggcccgttttgacagctcta 52464214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 263 - 327
Target Start/End: Original strand, 43286284 - 43286348
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 327  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| |||||||||    
T  43286284 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcg 43286348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 139 - 177
Target Start/End: Original strand, 51204242 - 51204280
Alignment:
Q  139 agcttgagtggattgaggccattaataatattagctgtt 177  Q
    ||||||||| |||||||||||||||||||||| ||||||    
T  51204242 agcttgagtagattgaggccattaataatattcgctgtt 51204280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Complemental strand, 19240827 - 19240790
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcg 327  Q
    ||||||||||||||||| ||| ||||||||||||||||    
T  19240827 ggctgcaattattaggcccaaaccctacattttattcg 19240790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 1e-38; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 21 - 126
Target Start/End: Original strand, 27966449 - 27966554
Alignment:
Q  21 acttagcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtggagtaagcttcttatgttagattgctactgatatatcagagg 120  Q
    ||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||| || |||||||||||    
T  27966449 acttatcttgtttaatgtcttttggtgaattgatgccaacattaatttggtggatgtgcactaagcttcttatgttagattgctattgctatatcagagg 27966548  T
Q  121 cttgtg 126  Q
    | ||||    
T  27966549 catgtg 27966554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 74 - 177
Target Start/End: Original strand, 27966550 - 27966649
Alignment:
Q  74 atgtggagtaagcttcttatgttagattgctactgatatatcagaggcttgtgttttttctactcagcttgagtggattgaggccattaataatattagc 173  Q
    ||||| ||||||||||||||||||||||||||||| |||||||||||||| ||| |    | |||||||||||||||||||||||||||||||||||||     
T  27966550 atgtgcagtaagcttcttatgttagattgctactgctatatcagaggcttttgtgt----tgctcagcttgagtggattgaggccattaataatattagt 27966645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 253 - 345
Target Start/End: Original strand, 27966766 - 27966858
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggccca 345  Q
    ||||||||| |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||||||||| ||| | |||||  ||||||||    
T  27966766 ttttatgggccgggctaaaaagccctggaaaaatttgggctgcaattattaggcccaagccctacattttactcgggctttcgggccggccca 27966858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 346
Target Start/End: Complemental strand, 20139298 - 20139215
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccat 346  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| ||||||||| | |||||  |||||||||    
T  20139298 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccat 20139215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 22193571 - 22193654
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccat 346  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| ||||||||| | |||||  |||||||||    
T  22193571 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccat 22193654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 349
Target Start/End: Original strand, 31472538 - 31472597
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccatttt 349  Q
    ||||||||||||||||| |||||||||| ||||||||| | |||||  ||||||| ||||    
T  31472538 ggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccgtttt 31472597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 253 - 359
Target Start/End: Original strand, 42739374 - 42739480
Alignment:
Q  253 ttttatgggacgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaac 352  Q
    |||| |||| |||| ||||||  |||||||||||   ||||||||||||||||| |||||||||| ||||||||| | |||||  ||||||| |||| ||    
T  42739374 ttttttgggccgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccgttttgac 42739473  T
Q  353 agctcta 359  Q
    |||||||    
T  42739474 agctcta 42739480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 291 - 327
Target Start/End: Original strand, 45451820 - 45451856
Alignment:
Q  291 gctgcaattattaggctcaagccctacattttattcg 327  Q
    |||||||||||| ||||||||||||||||||||||||    
T  45451820 gctgcaattattcggctcaagccctacattttattcg 45451856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 360
Target Start/End: Complemental strand, 3940727 - 3940656
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttc-gaaccggcccattttaacagctctaa 360  Q
    |||| |||||||| ||| |||||||||||||||||||| | |||| |  |||||||||||| ||||||||||    
T  3940727 ggctccaattattcggcccaagccctacattttattcgggctttcggggccggcccattttgacagctctaa 3940656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 290 - 361
Target Start/End: Complemental strand, 9996297 - 9996226
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaat 361  Q
    |||| |||||||| ||| |||||||||||||||||||| | |||||  |||||||||||| |||||||||||    
T  9996297 ggctccaattattcggcccaagccctacattttattcgggctttcggcccggcccattttgacagctctaat 9996226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 290 - 359
Target Start/End: Original strand, 38976295 - 38976364
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctcta 359  Q
    ||||||||||||||||| |||||||||| ||||||||| | |||||  ||||||| |||| |||||||||    
T  38976295 ggctgcaattattaggcccaagccctacgttttattcgggctttcgggccggcccgttttgacagctcta 38976364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 290 - 344
Target Start/End: Complemental strand, 24477340 - 24477286
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggccc 344  Q
    |||| |||||||| |||||||||||||||||||||||| | |||||  |||||||    
T  24477340 ggctccaattattcggctcaagccctacattttattcgggctttcgggccggccc 24477286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 290 - 334
Target Start/End: Complemental strand, 6453068 - 6453024
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgagttttc 334  Q
    ||||||||||||| ||| ||| |||||||||||||||||| ||||    
T  6453068 ggctgcaattattcggcacaaaccctacattttattcgagctttc 6453024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 263 - 346
Target Start/End: Original strand, 15614178 - 15614261
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccat 346  Q
    |||| ||||||  |||||||||||   ||||||||||||||||| ||||||||| |||||||||| | |||||  |||||||||    
T  15614178 cgggctaaaaagccctggaaaaattcgggctgcaattattaggcccaagccctatattttattcgggctttcgggccggcccat 15614261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 263 - 360
Target Start/End: Complemental strand, 5271156 - 5271059
Alignment:
Q  263 cgggttaaaaaatcctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcgagttttcgaaccggcccattttaacagctctaa 360  Q
    |||| |||||| ||||||||||||   |||| ||||| || ||| |||||||| ||||||||||| | |||||  ||||||| |||| ||||||||||    
T  5271156 cgggctaaaaagtcctggaaaaattcgggctccaatttttcggcccaagccctgcattttattcgggctttcgggccggcccgttttgacagctctaa 5271059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 290 - 329
Target Start/End: Complemental strand, 4564975 - 4564936
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcgag 329  Q
    |||||||||| |||||| ||||||||||||||||||||||    
T  4564975 ggctgcaatttttaggcacaagccctacattttattcgag 4564936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 290 - 327
Target Start/End: Original strand, 40861091 - 40861128
Alignment:
Q  290 ggctgcaattattaggctcaagccctacattttattcg 327  Q
    |||| |||||||| ||||||||||||||||||||||||    
T  40861091 ggctccaattattcggctcaagccctacattttattcg 40861128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 327
Target Start/End: Original strand, 46237631 - 46237682
Alignment:
Q  276 cctggaaaaatcaaggctgcaattattaggctcaagccctacattttattcg 327  Q
    |||||||||||   ||||||||||||||||| ||||||||| ||||||||||    
T  46237631 cctggaaaaattcgggctgcaattattaggcccaagccctatattttattcg 46237682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University