View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_27 (Length: 427)
Name: NF1763_high_27
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_27 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 89; Significance: 9e-43; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 20 - 237
Target Start/End: Original strand, 7020202 - 7020414
Alignment:
| Q |
20 |
gagtgcccgtcttttcgctagtagtaaataagatac-tttaaataaagaataaaattgaaaaggaaaaagttccgcacaaacacgtctannnnnnnnnnn |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||| |||| |||||||||| |
|
|
| T |
7020202 |
gagtgcccgtcttttcgctagtagtaaataagatacttttaaatgaaggataaaattgaaaaggaaaaagttcagcac-aacacgtcta----ttttttt |
7020296 |
T |
|
| Q |
119 |
nnatatgtaacatatataattaagtattgagaaaaagattgattattgcgaattgattaaatgaagnnnnnnntaattacaatataatacactttatccc |
218 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||| || |||||||||||||||| |
|
|
| T |
7020297 |
ttatatgtagcatatataattaagtattgaaaaaaagattgattattgcgaattgattaaatgaag-aaaaaatgattaaaacataatacactttatccg |
7020395 |
T |
|
| Q |
219 |
gtcatcctttttcttacga |
237 |
Q |
| |
|
||||||||||||| |||| |
|
|
| T |
7020396 |
atcatcctttttctcacga |
7020414 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 323 - 405
Target Start/End: Original strand, 7020437 - 7020519
Alignment:
| Q |
323 |
tttttcggtggaataaccacttgaactcaattgcttctaaatcttattaatcataacaaacttgtaaatttgacgttagtgct |
405 |
Q |
| |
|
||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||||||| |
|
|
| T |
7020437 |
ttttttggtggaacaaccacttgaactcaattgcttctaaatcttattaatcataacaaaattgtaaatttgaccttagtgct |
7020519 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 41 - 87
Target Start/End: Original strand, 42561220 - 42561266
Alignment:
| Q |
41 |
tagtaaataagatactttaaataaagaataaaattgaaaaggaaaaa |
87 |
Q |
| |
|
|||||||||| ||| ||||||| ||| |||||||||||||||||||| |
|
|
| T |
42561220 |
tagtaaataaaatattttaaatgaaggataaaattgaaaaggaaaaa |
42561266 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 39 - 79
Target Start/End: Original strand, 32640178 - 32640218
Alignment:
| Q |
39 |
agtagtaaataagatactttaaataaagaataaaattgaaa |
79 |
Q |
| |
|
|||||||||||| |||||||| ||||||| ||||||||||| |
|
|
| T |
32640178 |
agtagtaaataaaatactttagataaagagtaaaattgaaa |
32640218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University