View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_28 (Length: 426)
Name: NF1763_high_28
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_28 |
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| [»] scaffold0019 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 368; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 368; E-Value: 0
Query Start/End: Original strand, 1 - 412
Target Start/End: Original strand, 6414682 - 6415093
Alignment:
| Q |
1 |
aagtgttattttgcctataaaggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaatctctctattcttctctctttcattt |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
6414682 |
aagtgttattgtgcctataaaggctttgtattgtgaaacttcaagtcttaatgagattacacagttcatatcaatctctctattcttctctctttcattt |
6414781 |
T |
|
| Q |
101 |
ttcagttctannnnnnnnatttctcatcttgctaaaaactgcttatttcaataagcacttctgcgcatatgaacacactcatatgaacacagtttctgtt |
200 |
Q |
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|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
6414782 |
ttcagttctattttttttatttctcatcttgctaaaaactgcttatttcaataagcacttctgcgcatatgaacacacgcatatgaacacagtttctgtt |
6414881 |
T |
|
| Q |
201 |
caaacagtaacaacaatgccaacccctttcacattctagaagagaattaacatctaggaaaagtaactacatccctatagagttcaagtttagaaggaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
6414882 |
caaacagtaacaacaatgccaacccctttcacattctagaagagaattaacatctaggaaaagtaactacatccctatagagttcaagtttagaaggaga |
6414981 |
T |
|
| Q |
301 |
tatatagttgctttgcaaacatttttcataatctcctttgtctaattcttcgtgcttgtcaacctctaaattcaccatgaaaagggtttttggcgtcgaa |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
6414982 |
tatatagttgctttgcaaacatttttcataatctcctttgtctaattcttcgtggttgtcaacctctaaattcaccacgaaaagggtttttggcgtcgaa |
6415081 |
T |
|
| Q |
401 |
cctcattgatag |
412 |
Q |
| |
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|||||||||||| |
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| T |
6415082 |
cctcattgatag |
6415093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 19 - 91
Target Start/End: Original strand, 9487873 - 9487945
Alignment:
| Q |
19 |
aaaggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaatctctctattcttctct |
91 |
Q |
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| T |
9487873 |
aaaggctttgtattgtgaaacttcaagtcttaatgagagtacacaattcatagaaatcattatattcttctct |
9487945 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 17156640 - 17156538
Alignment:
| Q |
1 |
aagtgttattttgcctataaa-ggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaatctctctattcttctctctttcatt |
99 |
Q |
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||||| |||| |||||||||| ||||||||||||||||| |||| ||||||||||||||||| | ||| || ||||| |||||||||||| |||| |||| |
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| T |
17156640 |
aagtgctattgtgcctataaaaggctttgtattgtgaaatttcatgtcttaatgagattacataattcatagcaatcactctattcttctttcttccatt |
17156541 |
T |
|
| Q |
100 |
ttt |
102 |
Q |
| |
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||| |
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| T |
17156540 |
ttt |
17156538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 23 - 107
Target Start/End: Original strand, 31000755 - 31000839
Alignment:
| Q |
23 |
gctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaatctctctattcttctctctttcatttttcagtt |
107 |
Q |
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||||||||||||| |||||||| |||||||||| | |||| ||| || ||||||||||||||||| ||||||| ||||||||| |
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| T |
31000755 |
gctttgtattgtgtaacttcaaaccttaatgagagtccacaattcatagaaatctctctattcttctgtctttcagttttcagtt |
31000839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 51; Significance: 4e-20; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 25170271 - 25170381
Alignment:
| Q |
1 |
aagtgttattttgcctataaa-ggctttgtattgtgaaacttcaagtcttaatgagattacacagttcctatcaatctctctattcttctctctttcatt |
99 |
Q |
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||||| |||| |||||||||| |||||||||||||||||||||||||||||||||||||||| | ||| || ||| |||||||||||||| | |||| |
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| T |
25170271 |
aagtgatattgtgcctataaaaggctttgtattgtgaaacttcaagtcttaatgagattacagaattcatagcaactattctattcttctctcgtccatt |
25170370 |
T |
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| Q |
100 |
tttcagttcta |
110 |
Q |
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|||| |||||| |
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| T |
25170371 |
tttctgttcta |
25170381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 54
Target Start/End: Original strand, 26905426 - 26905480
Alignment:
| Q |
1 |
aagtgttattttgcctataaa-ggctttgtattgtgaaacttcaagtcttaatga |
54 |
Q |
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||||| |||| |||||||||| |||||||||||||| ||||||||||| |||||| |
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| T |
26905426 |
aagtgctattatgcctataaaaggctttgtattgtgcaacttcaagtcgtaatga |
26905480 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0019 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0019
Description:
Target: scaffold0019; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 19 - 58
Target Start/End: Complemental strand, 59528 - 59489
Alignment:
| Q |
19 |
aaaggctttgtattgtgaaacttcaagtcttaatgagatt |
58 |
Q |
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| T |
59528 |
aaaggctttgtattgtgcaacttcaagtcttaatgagatt |
59489 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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