View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_30 (Length: 405)
Name: NF1763_high_30
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_30 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 12 - 387
Target Start/End: Original strand, 25361932 - 25362307
Alignment:
| Q |
12 |
taacaagttatatataccaaacacaataacaatgaagaacaattaatttagcataatacaaataaacttaccctctttttaggtacagctgttggaagct |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25361932 |
taacaagttatatataccaaacacaataacaatgaagaacaattaatttagcataatacaaataaacttaccctctttttaggtacagctgttggaagct |
25362031 |
T |
|
| Q |
112 |
gttgtattgcccgatgttctttgttattgtgttttactacgacttttgcaacccggttagacttgaaaatcttgttagcgaacaatcttccacaagtatg |
211 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
25362032 |
gttgtattgcccgttgttctttgttattgtgttttactacgacttttgcaacccgcttagacttgaaaatcttgttagcgaacaatcttccacaggtatg |
25362131 |
T |
|
| Q |
212 |
ctccgggcagagtgtcccgaccctaaatgtggtaggccttaccactctattcacaaaaatagtgtatccacattttttgtttaacttacaaacagctcta |
311 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
25362132 |
ctccgggcagagtgtcccgaccctaaatgtggtaggccttaccactctactcacaaaaatagtgtatccacattttttgttaaacttacaaacagctcta |
25362231 |
T |
|
| Q |
312 |
accttccatttgtcgttctcggcaaattttatctctctgttatttaacacattgtgctcttgaacaacatccttaa |
387 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
25362232 |
accttccatttgtcgttctcggtaaattttatctctctgttatttaacacattgtgctcttgaacaacatccttaa |
25362307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 274 - 387
Target Start/End: Original strand, 25352842 - 25352955
Alignment:
| Q |
274 |
tgtatccacattttttgtttaacttacaaacagctctaaccttccatttgtcgttctcggcaaattttatctctctgttatttaacacattgtgctcttg |
373 |
Q |
| |
|
||||||||||||||| ||| ||||||||||||||| ||||| ||| ||| || ||| |||||||||||| | |||| |||||| |||| ||||||| | |
|
|
| T |
25352842 |
tgtatccacatttttggttgaacttacaaacagctttaaccctccttttctcaatcttggcaaattttatttttctgccatttaatacatcgtgctctcg |
25352941 |
T |
|
| Q |
374 |
aacaacatccttaa |
387 |
Q |
| |
|
|||||| ||||||| |
|
|
| T |
25352942 |
aacaacgtccttaa |
25352955 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 15 - 95
Target Start/End: Original strand, 25357285 - 25357367
Alignment:
| Q |
15 |
caagttatatataccaaacacaataacaatgaagaacaattaatttagcataataca--aataaacttaccctctttttaggt |
95 |
Q |
| |
|
||||||| ||| | ||||||||| ||||| |||||||||||||||||||| |||| | |||||| |||||||||| |||||| |
|
|
| T |
25357285 |
caagttagataaaacaaacacaaaaacaaagaagaacaattaatttagcagaataaaacaataaaattaccctcttgttaggt |
25357367 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 265 - 387
Target Start/End: Original strand, 25357507 - 25357629
Alignment:
| Q |
265 |
caaaaatagtgtatccacattttttgtttaacttacaaacagctctaaccttccatttgtcgttctcggcaaattttatctctctgttatttaacacatt |
364 |
Q |
| |
|
|||||| | ||||| ||||||||| ||| ||| ||||||||||||||| |||| |||| | ||| || ||||||||| | |||| |||||| ||||| |
|
|
| T |
25357507 |
caaaaacattgtatgcacatttttggttgaaccaacaaacagctctaacattccttttgccattcctggtaaattttatttttctgccatttaatacatt |
25357606 |
T |
|
| Q |
365 |
gtgctcttgaacaacatccttaa |
387 |
Q |
| |
|
| ||||| ||||||| ||||||| |
|
|
| T |
25357607 |
gagctctcgaacaacgtccttaa |
25357629 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University