View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_31 (Length: 393)
Name: NF1763_high_31
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_31 |
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Alignment Details
Target: chr1 (Bit Score: 325; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 325; E-Value: 0
Query Start/End: Original strand, 1 - 375
Target Start/End: Complemental strand, 33512880 - 33512508
Alignment:
| Q |
1 |
aagatacgcactaacaaagagagagtataatgaaaatgatgaaacactaattttccattatgtgacaaaatatagaaaactaaaagacacgcaataaccg |
100 |
Q |
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| T |
33512880 |
aagatacgcactaacaaagagagagtataatgaaaatgatgaaacactaatt--ccattatgtgacaaaatatagaaaactaaaagacacgcaataaccg |
33512783 |
T |
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| Q |
101 |
caccatgctttcaccgtgtgcataacattttggacttaccagaaattatacnnnnnnnnntcttaaattatacaataccttaatgatatttgtgttatca |
200 |
Q |
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| T |
33512782 |
caccatgctttcaccgtgtgcataacattttggacttaccagaaattatacaaaaaaaaatcttaaattatacaataccttaatgatatttgtgttatca |
33512683 |
T |
|
| Q |
201 |
tgatcagattcaggtgagagtttgagggatattttcttgacatgaaaccaaagagaattgaaaatggaacctcctccttcggcgtggttatggttttgct |
300 |
Q |
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| T |
33512682 |
ttatcagattcaggtgagagtttgagggatattttcttgacatgaaagcaaagagaattgaaaatggaacctccaccttcggcgtggttatggttttgct |
33512583 |
T |
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| Q |
301 |
ttggaatttttgagagcttgattctctttatctgcttcttcagctgccagtaattcacgaatgcctccttccatt |
375 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33512582 |
ttggaatttttgagagcttgattctctttatctgcttcttcagctgccagtaattcacgaatgcctccttccatt |
33512508 |
T |
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