View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF1763_high_38 (Length: 370)
Name: NF1763_high_38
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_38 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 284; Significance: 1e-159; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 10 - 353
Target Start/End: Original strand, 7971202 - 7971545
Alignment:
| Q |
10 |
ataatactttgaattgaacatgatataccaagaaaacaaaaacttgacctagaaattacccttttattaatgattagattttaatcctccacaacagtta |
109 |
Q |
| |
|
|||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
7971202 |
ataatactttgaattgaacatgatatgccaggaaaacaaaaacttgacctagaaattacccttttattaatgattagattttaattctccacaacagttg |
7971301 |
T |
|
| Q |
110 |
taccgatgcagaagctgcacctatgcaactgttacgtatgtgaatatttataaaatttatcatccataagattaacagaatcacagtggatcatcgtgat |
209 |
Q |
| |
|
||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||| |
|
|
| T |
7971302 |
caccgatgcagaagttgcagctatgcaactgttacgtatgtgaatatttataaaatttatcatccgtaagattaacaaaatcacagtggatcatcgtgat |
7971401 |
T |
|
| Q |
210 |
tctgataaaaactacactttgaaaattcaacaaaatcacgatgccactatgatcttgctaagctcaccatgaaccatgcacaagattttataagtgctat |
309 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
7971402 |
tctgataaaaactacactttgaaatttcaacaaaaccacgatgccattgtgatcttgctaagctcaccatgaaccatgcacaagattttataagtgttat |
7971501 |
T |
|
| Q |
310 |
gttattgttactttaacttgtttgtcacatatttgagtagatca |
353 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7971502 |
gttactgttactttaacttgtttgtcacatatttgagtagatca |
7971545 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 205 - 262
Target Start/End: Original strand, 34569988 - 34570045
Alignment:
| Q |
205 |
gtgattctgataaaaactacactttgaaaattcaacaaaatcacgatgccactatgat |
262 |
Q |
| |
|
|||||| ||| |||| || ||||||||||||| ||||||||||| |||||||| |||| |
|
|
| T |
34569988 |
gtgattttgacaaaagctgcactttgaaaatttaacaaaatcacaatgccactgtgat |
34570045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University