View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF1763_high_39 (Length: 370)

Name: NF1763_high_39
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF1763_high_39
NF1763_high_39
[»] chr4 (5 HSPs)
chr4 (11-351)||(48962666-48963006)
chr4 (32-286)||(48958540-48958794)
chr4 (16-189)||(48965706-48965879)
chr4 (31-179)||(48911981-48912129)
chr4 (73-132)||(48951668-48951727)
[»] chr6 (2 HSPs)
chr6 (13-288)||(12589696-12589971)
chr6 (15-288)||(12482991-12483264)
[»] chr2 (3 HSPs)
chr2 (46-172)||(13440607-13440733)
chr2 (31-172)||(13448755-13448896)
chr2 (46-172)||(13455241-13455367)
[»] scaffold0536 (2 HSPs)
scaffold0536 (13-164)||(6162-6313)
scaffold0536 (13-162)||(10148-10297)
[»] chr5 (2 HSPs)
chr5 (53-172)||(28385748-28385867)
chr5 (40-181)||(12541086-12541227)
[»] chr8 (1 HSPs)
chr8 (73-172)||(12641124-12641223)
[»] chr7 (1 HSPs)
chr7 (91-177)||(3417171-3417257)


Alignment Details
Target: chr4 (Bit Score: 317; Significance: 1e-179; HSPs: 5)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 11 - 351
Target Start/End: Original strand, 48962666 - 48963006
Alignment:
Q  11 cacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagcct 110  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48962666 cacagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagcct 48962765  T
Q  111 tgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatg 210  Q
    ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  48962766 tgtgacccgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgttgacaatgagtccatttgtttttagcattgtctcatg 48962865  T
Q  211 caccatttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaactaacgaatccaaatctgtgtga 310  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  48962866 caccatttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgatagagtgaggaaaatttggaacaacgaacaaatccaaatctgtgtga 48962965  T
Q  311 gatttcaatgaggggtttattctaagggattctatgaggga 351  Q
    |||||||||||||||||||||||||||||||| ||||||||    
T  48962966 gatttcaatgaggggtttattctaagggattccatgaggga 48963006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 119; E-Value: 1e-60
Query Start/End: Original strand, 32 - 286
Target Start/End: Original strand, 48958540 - 48958794
Alignment:
Q  32 acaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgt 131  Q
    |||||| |||||| |||||| |||| ||||||||||| || || ||||||||||||| | ||||| ||||||||| |||||||||| ||| |||||| ||    
T  48958540 acaacattctcatttcccctctctgatttctcttgaatggtttggcgaataagagaagcaggaccaagatgccaaaccttgtgacccgtgattttcttgt 48958639  T
Q  132 agtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgcaccatttccatgaatccggt 231  Q
    |||||||||||||||||||||| |||||||||  ||||||| |||  |||||||| ||  |||| || ||||||||| ||| ||||||||||||||||||    
T  48958640 agtgttcgatgcactcttcaccatcaagttcaatgaagttgttgatgatgagtcccttacttttgaggattgtctcaagcatcatttccatgaatccggt 48958739  T
Q  232 gaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaaca 286  Q
    ||||  ||| ||||||||||| ||||||||||  || ||||||||||||||||||    
T  48958740 gaatatctttggcggctttgtacacaaggtgatggaatgaggaaaatttggaaca 48958794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 16 - 189
Target Start/End: Original strand, 48965706 - 48965879
Alignment:
Q  16 acactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtga 115  Q
    ||||||||| |||| |||  ||||||| |||||||| ||||||||||||||||| | ||| |||||||||||| ||||||| |||||||||||||| |||    
T  48965706 acactcttgcacgctcactgcactctcttgtcccctctctgctttctcttgaacagttttacgaataagagaagctggaccaagatgccaagccttatga 48965805  T
Q  116 cctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatt 189  Q
    || ||| |  || | || | ||  ||| ||||||| |||||||| |||||||| ||| ||||||||||||||||    
T  48965806 cccgtgctactcacataatatttaatgtactcttccccgtcaagctcagcgaaattgttgacaatgagtccatt 48965879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 31 - 179
Target Start/End: Complemental strand, 48912129 - 48911981
Alignment:
Q  31 cacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcg 130  Q
    |||||||||||| | ||| || || || ||||||||||  | | |||||||||||||| ||||||| ||||||||||| |||||||  || |||||||||    
T  48912129 cacaacactctcttctcctctctcagccttctcttgaatagttctgcgaataagagaagctggaccaagatgccaagctttgtgacaagtagttttctcg 48912030  T
Q  131 tagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaa 179  Q
    |||||||||||  |||||||||||||||||||||| || ||| ||||||    
T  48912029 tagtgttcgatatactcttcaccgtcaagttcagcaaaattgttgacaa 48911981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 73 - 132
Target Start/End: Original strand, 48951668 - 48951727
Alignment:
Q  73 tttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgta 132  Q
    |||||||| ||||||  | ||||| ||||||||||||||||||||  |||||||||||||    
T  48951668 tttgcgaacaagagaggccggaccaagatgccaagccttgtgaccgatggttttctcgta 48951727  T

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Target: chr6 (Bit Score: 116; Significance: 6e-59; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 116; E-Value: 6e-59
Query Start/End: Original strand, 13 - 288
Target Start/End: Complemental strand, 12589971 - 12589696
Alignment:
Q  13 cagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttg 112  Q
    |||||||||||| |||  |||||||||||||| |||||| ||||||||||||||||| | |||| ||||||||||| ||||||| |||||||||||||||    
T  12589971 cagacactcttgcacgttcacaacactctcatttcccctatctgctttctcttgaacagttttgtgaataagagaagctggaccaagatgccaagccttg 12589872  T
Q  113 tgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgca 212  Q
    ||||||||||||||||| ||||||| ||  |||||||  || |||||||||||||||||| | ||||||||||||||  |||| || |||| |||| |||    
T  12589871 tgacctgtggttttctcatagtgtttgacacactcttggccatcaagttcagcgaagttgttaacaatgagtccattacttttgagtattgcctcaagca 12589772  T
Q  213 ccatttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaac 288  Q
     | ||||||||| | ||||||| | ||| || || || ||||| ||||||| |   ||||||||||||||||||||    
T  12589771 tcgtttccatgacttcggtgaacgcctttggtggattagtgcataaggtgatacgatgaggaaaatttggaacaac 12589696  T

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Target: chr6; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 15 - 288
Target Start/End: Complemental strand, 12483264 - 12482991
Alignment:
Q  15 gacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtg 114  Q
    ||||||| || |||| |||||||||||| | |||||| ||||| || |||||||| | ||  | |||||| |||  |||||| | |||||||||||||||    
T  12483264 gacactcatgcacgctcacaacactctcgtttcccctctctgccttttcttgaacagtttcacaaataagtgaatgtggacctaaatgccaagccttgtg 12483165  T
Q  115 acctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgacaatgagtccatttgtttttagcattgtctcatgcacc 214  Q
    |||  || |||| ||||||||||||| ||| ||||  || || ||||||| |||| |  |||| ||||||| |||  ||||  | ||||| ||| ||| |    
T  12483164 acccatgattttttcgtagtgttcgacgcattctttgccatccagttcagtgaagctattgacgatgagtctattacttttgtgtattgtttcaagcatc 12483065  T
Q  215 atttccatgaatccggtgaatgacttcggcggctttgtgcacaaggtgaaagagtgaggaaaatttggaacaac 288  Q
    ||||| | ||||   |||||   ||| || || |||||||||||||||| |  |||||||||||||||||||||    
T  12483064 atttctaggaatattgtgaacatctttggtggttttgtgcacaaggtgatatggtgaggaaaatttggaacaac 12482991  T

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Target: chr2 (Bit Score: 79; Significance: 7e-37; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 13440607 - 13440733
Alignment:
Q  46 tcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcac 145  Q
    |||||| |||||||||||||||| || ||| ||||||||||||  |||||||||||||||| |||||||||| ||||||||||| ||||||| |||||||    
T  13440607 tcccctctctgctttctcttgaatggttttacgaataagagaagttggaccgagatgccaaaccttgtgacccgtggttttctcatagtgttggatgcac 13440706  T
Q  146 tcttcaccgtcaagttcagcgaagttg 172  Q
    ||||| ||||||||||||| |||||||    
T  13440707 tcttctccgtcaagttcagtgaagttg 13440733  T

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Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 31 - 172
Target Start/End: Original strand, 13448755 - 13448896
Alignment:
Q  31 cacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcg 130  Q
    |||| ||| ||||| |||||| |||| |||||||||| | | ||||||||||||||||  |||||| ||||||||| |||||||||| |||| |||||||    
T  13448755 cacagcaccctcatttcccctctctgatttctcttgagcagttttgcgaataagagaagttggaccaagatgccaaaccttgtgacccgtggctttctcg 13448854  T
Q  131 tagtgttcgatgcactcttcaccgtcaagttcagcgaagttg 172  Q
    |||||||  ||||||||||| || |||||||||  |||||||    
T  13448855 tagtgttgtatgcactcttctccatcaagttcactgaagttg 13448896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 46 - 172
Target Start/End: Original strand, 13455241 - 13455367
Alignment:
Q  46 tcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcac 145  Q
    |||||| |||| ||| |||||||||| | ||| ||||||||||  |||||| | ||||||| ||||||||||||| ||||| |||||||||| |||||||    
T  13455241 tcccctctctgatttttcttgaacggttctgcaaataagagaagttggaccaatatgccaaaccttgtgacctgttgttttttcgtagtgttggatgcac 13455340  T
Q  146 tcttcaccgtcaagttcagcgaagttg 172  Q
    ||||| || |||| ||||  |||||||    
T  13455341 tcttctccatcaaattcactgaagttg 13455367  T

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Target: scaffold0536 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0536
Description:

Target: scaffold0536; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 13 - 164
Target Start/End: Complemental strand, 6313 - 6162
Alignment:
Q  13 cagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttg 112  Q
    ||||||||| || || | ||||||||| |  |||||||| | |||||| |||||||| | | | |||||||||||| | ||||| ||||||||||| |||    
T  6313 cagacactcatgcacactcacaacactttgttgtcccctctgtgctttttcttgaacagttctacgaataagagaagccggaccaagatgccaagctttg 6214  T
Q  113 tgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcag 164  Q
    |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  6213 tgacctgtagttttctcgtagtgttcgatgtactcttcaccgtcaagttcag 6162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0536; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 13 - 162
Target Start/End: Complemental strand, 10297 - 10148
Alignment:
Q  13 cagacactcttgtacgcccacaacactctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttg 112  Q
    ||||||||| || || | |||||||||||  | ||| || |||| |||||||||||| | | | |||| |||| || ||||||  ||||||||||| ||     
T  10297 cagacactcatgcacactcacaacactctgttctcctctctctgttttctcttgaacagttctacgaacaagataagctggactaagatgccaagctttc 10198  T
Q  113 tgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttc 162  Q
    ||||| || ||||||| |||||||||||||  || || ||||||||||||    
T  10197 tgacccgtagttttcttgtagtgttcgatgtgctatttaccgtcaagttc 10148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 56; Significance: 4e-23; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 53 - 172
Target Start/End: Original strand, 28385748 - 28385867
Alignment:
Q  53 tctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcac 152  Q
    ||||||||||||||||| | ||| |||||||  |||  |||||| |||||||||||||||||||| ||||||||||||||||||| ||  |||||||| |    
T  28385748 tctgctttctcttgaacagttttacgaataaaggaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgtttgacacactcttctc 28385847  T
Q  153 cgtcaagttcagcgaagttg 172  Q
    | ||||||||| | ||||||    
T  28385848 catcaagttcaacaaagttg 28385867  T

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Target: chr5; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 40 - 181
Target Start/End: Original strand, 12541086 - 12541227
Alignment:
Q  40 ctcatgtcccctttctgctttctcttgaacggatttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcg 139  Q
    ||||| ||||||  ||||||||||||||| |  |||  |||||| ||||  |||||| |||||||||||||||||||| ||||||||||||||||||| |    
T  12541086 ctcatttcccctccctgctttctcttgaatgtttttctgaataaaagaagttggaccaagatgccaagccttgtgacccgtggttttctcgtagtgttgg 12541185  T
Q  140 atgcactcttcaccgtcaagttcagcgaagttgctgacaatg 181  Q
    |  |||||||| || ||||||||| | |||||| ||| ||||    
T  12541186 acacactcttctccatcaagttcaacaaagttgttgataatg 12541227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 73 - 172
Target Start/End: Complemental strand, 12641223 - 12641124
Alignment:
Q  73 tttgcgaataagagaaactggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttg 172  Q
    ||||||||||||| ||  |||||| |||||||||||||||| |||  |||||||||| ||||||| |||||| |||||||| ||||||||| | ||||||    
T  12641223 tttgcgaataagacaagttggaccaagatgccaagccttgtaacccatggttttctcatagtgtttgatgcaatcttcaccatcaagttcaacaaagttg 12641124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 91 - 177
Target Start/End: Complemental strand, 3417257 - 3417171
Alignment:
Q  91 tggaccgagatgccaagccttgtgacctgtggttttctcgtagtgttcgatgcactcttcaccgtcaagttcagcgaagttgctgac 177  Q
    |||||| |||||||||||||||||||||  ||||||||| |||||||  || |||||||| || |||||||||  ||||||| ||||    
T  3417257 tggaccaagatgccaagccttgtgacctacggttttctcatagtgttgaatacactcttctccatcaagttcaatgaagttgttgac 3417171  T

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