View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF1763_high_42 (Length: 360)
Name: NF1763_high_42
Description: NF1763
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF1763_high_42 |
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Alignment Details
Target: chr2 (Bit Score: 308; Significance: 1e-173; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 39 - 350
Target Start/End: Original strand, 9090614 - 9090925
Alignment:
| Q |
39 |
ttgctttaagttcaaataccaaatagattacattctttttacctgattcaaattgttgtttcgtatttgtttccagtcaccagtgttgttgtcaagtgtt |
138 |
Q |
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| T |
9090614 |
ttgctttaagttcaaataccaaatagattacattctttttacctgattcaaattgttgtttcgtatttgtttccagtcaccagtgttgttgtcaagtgtt |
9090713 |
T |
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| Q |
139 |
agcattgttattgtcaaacctgtatcaatccattaattgaccacttttgttgtgcagttcacttttgggcacctgcatttaagtggggtatcaccgttgc |
238 |
Q |
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| T |
9090714 |
agcattgttattgtcaaacctgtatcaatccattaattgaccacttttgttgtgcagttcacttttgggcacctgcatttaagtggggtatcaccgttgc |
9090813 |
T |
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| Q |
239 |
caatgttgctgattttacaaaaccaactgagaagatttcctatcctcatcaaataagtatgtgcatgcatatagaactgcacgtagtgttatctattgcg |
338 |
Q |
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| T |
9090814 |
caatgttgctgattttacaaaaccaactgagaagatttcctatcctcaccaaataagtatgtgcatgcatatagaactgcacgtagtgttatctattgcg |
9090913 |
T |
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| Q |
339 |
aacttctctctg |
350 |
Q |
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| T |
9090914 |
aacttctctctg |
9090925 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 42 - 308
Target Start/End: Original strand, 9094973 - 9095229
Alignment:
| Q |
42 |
ctttaagttcaaataccaaatagattacattctttttacctgattcaaattgttgtttcgtatttgtttccagtcaccagtgttgttgtcaagtgttagc |
141 |
Q |
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| T |
9094973 |
ctttaagtacaagtaccaaatagattacatt---ttcacctgattcaaactgttgtctc-------tttccagtcaccaatgttgttttcaagtgttaat |
9095062 |
T |
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| Q |
142 |
attgttattgtcaaacctgta-tcaatccattaattgaccacttttgttgtgcagttcacttttgggcacctgcatttaagtggggtatcaccgttgcca |
240 |
Q |
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| T |
9095063 |
attgacattgtgaagc-tgtaatcgatgtataaattgaccacttattttgtgcagttcacttttgggcccctacatttaagtggggtatcagcattgcca |
9095161 |
T |
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| Q |
241 |
atgttgctgattttacaaaaccaactgagaagatttcctatcctcatcaaataagtatgtgcatgcat |
308 |
Q |
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| T |
9095162 |
atattgctgattttgcaaaaccacctgagaagctttcctatcctcaacaaataggtatgcgcatgcat |
9095229 |
T |
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